FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0585, 414 aa
  1>>>pF1KSDA0585 414 - 414 aa - 414 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8973+/-0.000829; mu= 10.2631+/- 0.050
 mean_var=109.6994+/-21.620, 0's: 0 Z-trim(111.0): 24  B-trim: 328 in 1/50
 Lambda= 0.122454
 statistics sampled from 11987 (12006) to 11987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.369), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS42383.1 JMJD6 gene_id:23210|Hs108|chr17        ( 414) 2850 514.0  1e-145
CCDS42384.1 JMJD6 gene_id:23210|Hs108|chr17        ( 403) 2764 498.8 3.8e-141


>>CCDS42383.1 JMJD6 gene_id:23210|Hs108|chr17             (414 aa)
 initn: 2850 init1: 2850 opt: 2850  Z-score: 2729.4  bits: 514.0 E(32554): 1e-145
Smith-Waterman score: 2850; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KSD MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TVRGRPKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSSSSDSDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVRGRPKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSSSSDSDSE
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KSD CESGSEGDGTVHRRKKRRTCSMVGNGDTTSQDDCVSKERSSSRIRDTCGGRAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CESGSEGDGTVHRRKKRRTCSMVGNGDTTSQDDCVSKERSSSRIRDTCGGRAHP
              370       380       390       400       410    

>>CCDS42384.1 JMJD6 gene_id:23210|Hs108|chr17             (403 aa)
 initn: 2764 init1: 2764 opt: 2764  Z-score: 2647.5  bits: 498.8 E(32554): 3.8e-141
Smith-Waterman score: 2764; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KSD MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TVRGRPKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSSSSDSDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVRGRPKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSSSSDSDSE
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KSD CESGSEGDGTVHRRKKRRTCSMVGNGDTTSQDDCVSKERSSSRIRDTCGGRAHP
       :::::::::::::::::::::::::::::::::::::::::::           
CCDS42 CESGSEGDGTVHRRKKRRTCSMVGNGDTTSQDDCVSKERSSSR           
              370       380       390       400              




414 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:11:15 2016 done: Thu Nov  3 02:11:16 2016
 Total Scan time:  2.660 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]