Result of FASTA (ccds) for
pF1KSDA0547
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0547, 686 aa
1>>>pF1KSDA0547 686 - 686 aa - 686 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7704+/-0.000894; mu= 16.8180+/- 0.053
mean_var=67.1114+/-13.448, 0's: 0 Z-trim(105.6): 29 B-trim: 0 in 0/51
Lambda= 0.156558
statistics sampled from 8496 (8508) to 8496 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.261), width: 16
Scan time: 2.760
The best scores are: opt bits E(32554)
CCDS10094.1 LCMT2 gene_id:9836|Hs108|chr15 ( 686) 4662 1062.3 0
CCDS45445.1 LCMT1 gene_id:51451|Hs108|chr16 ( 334) 613 147.7 2.7e-35
CCDS45446.1 LCMT1 gene_id:51451|Hs108|chr16 ( 279) 350 88.2 1.7e-17
>>CCDS10094.1 LCMT2 gene_id:9836|Hs108|chr15 (686 aa)
initn: 4662 init1: 4662 opt: 4662 Z-score: 5684.7 bits: 1062.3 E(32554): 0
Smith-Waterman score: 4662; 99.9% identity (100.0% similar) in 686 aa overlap (1-686:1-686)
10 20 30 40 50 60
pF1KSD MGPRSRERRAGAVQNTNDSSALSKRSLAARGYVQDPFAALLVPGAARRAPLIHRGYYVRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGPRSRERRAGAVQNTNDSSALSKRSLAARGYVQDPFAALLVPGAARRAPLIHRGYYVRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RAVRHCVRAFLEQIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLARAAVWEVDFPDVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RAVRHCVRAFLEQIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLARAAVWEVDFPDVAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RKAERIGETPELCALTGPFERGEPASALCFESADYCILGLDLRQLQRVEEALGAAGLDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RKAERIGETPELCALTGPFERGEPASALCFESADYCILGLDLRQLQRVEEALGAAGLDAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SPTLLLAEAVLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQDAFGQFMLQHFRQLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SPTLLLAEAVLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQDAFGQFMLQHFRQLNS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD PLHGLERFPDVEAQRRRFLQAGWTACGAVDINEFYHCFLPAEERRRVENIEPFDEFEEWH
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS10 PLHGLERFPDVEAQRRRFLQAGWTACGAVDMNEFYHCFLPAEERRRVENIEPFDEFEEWH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LKCAHYFILAASRGDTLSHTLVFPSSEAFPRVNPASPSGVFPASVVSSEGQVPNLKRYGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKCAHYFILAASRGDTLSHTLVFPSSEAFPRVNPASPSGVFPASVVSSEGQVPNLKRYGH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD ASVFLSPDVILSAGGFGEQEGRHCRVSQFHLLSRDCDSEWKGSQIGSCGTGVQWDGRLYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ASVFLSPDVILSAGGFGEQEGRHCRVSQFHLLSRDCDSEWKGSQIGSCGTGVQWDGRLYH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD TMTRLSESRVLVLGGRLSPVSPALGVLQLHFFKSEDNNTEDLKVTITKAGRKDDSTLCCW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TMTRLSESRVLVLGGRLSPVSPALGVLQLHFFKSEDNNTEDLKVTITKAGRKDDSTLCCW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RHSTTEVSCQNQEYLFVYGGRSVVEPVLSDWHFLHVGTMAWVRIPVEGEVPEARHSHSAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RHSTTEVSCQNQEYLFVYGGRSVVEPVLSDWHFLHVGTMAWVRIPVEGEVPEARHSHSAC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TWQGGALIAGGLGASEEPLNSVLFLRPISCGFLWESVDIQPPITPRYSHTAHVLNGKLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TWQGGALIAGGLGASEEPLNSVLFLRPISCGFLWESVDIQPPITPRYSHTAHVLNGKLLL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD VGGIWIHSSSFPGVTVINLTTGLSSEYQIDTTYVPWPLMLHNHTSILLPEEQQLLLLGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VGGIWIHSSSFPGVTVINLTTGLSSEYQIDTTYVPWPLMLHNHTSILLPEEQQLLLLGGG
610 620 630 640 650 660
670 680
pF1KSD GNCFSFGTYFNPHTVTLDLSSLSAGQ
::::::::::::::::::::::::::
CCDS10 GNCFSFGTYFNPHTVTLDLSSLSAGQ
670 680
>>CCDS45445.1 LCMT1 gene_id:51451|Hs108|chr16 (334 aa)
initn: 524 init1: 334 opt: 613 Z-score: 747.3 bits: 147.7 E(32554): 2.7e-35
Smith-Waterman score: 613; 36.1% identity (65.9% similar) in 305 aa overlap (13-314:26-323)
10 20 30 40
pF1KSD MGPRSRERRAGAVQNTNDSSALSKRSLAARGYVQDPFAALLVP-GAA
:..: ....: :: .. :: .::. .: .
CCDS45 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD RRAPLIHRGYYVRARAVRHCVRAFLEQIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLA
:.:: :.:::..:...: . ..:::. .. . ::..::::.:. ..::: :
CCDS45 RKAPEINRGYFARVHGVSQLIKAFLR-----KTECHCQIVNLGAGMDTTFWRLKDEDLLP
70 80 90 100 110
110 120 130 140 150 160
pF1KSD RAAVWEVDFPDVARRKAERIGETPELCA--LTGPFERGEPASALCFESADYCILGLDLRQ
. .::::: .. :: . : : : . : : .. ..: : ..: :::.
CCDS45 -SKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KSD LQRVEEALGAAGLDAASPTLLLAEAVLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQ
:...:: : .... ::::.:: ::.:. ::..: :. :::. : :.:. :::.
CCDS45 LSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMG
180 190 200 210 220 230
230 240 250 260 270 280
pF1KSD DAFGQFMLQHFRQLNSPLHGLERFPDVEAQRRRFLQAGWTACGAVDINEFYHCFLPAEER
: :::.:....:. . : :.: ..:.:..:.:. :: . .:::. :.:. :: :
CCDS45 DRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYN-RLPRAEV
240 250 260 270 280 290
290 300 310 320 330 340
pF1KSD RRVENIEPFDEFEEWHLKCAHYFILAASRGDTLSHTLVFPSSEAFPRVNPASPSGVFPAS
:.:..: .::.: . :: . :..:
CCDS45 SRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY
300 310 320 330
>>CCDS45446.1 LCMT1 gene_id:51451|Hs108|chr16 (279 aa)
initn: 486 init1: 295 opt: 350 Z-score: 427.5 bits: 88.2 E(32554): 1.7e-17
Smith-Waterman score: 450; 32.0% identity (57.4% similar) in 303 aa overlap (13-314:26-268)
10 20 30 40
pF1KSD MGPRSRERRAGAVQNTNDSSALSKRSLAARGYVQDPFAALLVP-GAA
:..: ....: :: .. :: .::. .: .
CCDS45 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD RRAPLIHRGYYVRARAVRHCVRAFLEQIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLA
:.:: :.:::..:...: . ..:::. .. . ::..::::.:. ..::: :
CCDS45 RKAPEINRGYFARVHGVSQLIKAFLR-----KTECHCQIVNLGAGMDTTFWRLKDEDLLP
70 80 90 100 110
110 120 130 140 150 160
pF1KSD RAAVWEVDFPDVARRKAERIGETPELCALTGPFERGEPASALCFESADYCILGLDLRQLQ
. .::::: .. :: . : .:
CCDS45 -SKYFEVDFPMIVTRKLHSI-------------------------------------KL-
120 130
170 180 190 200 210 220
pF1KSD RVEEALGAAGLDAASPTLLLAEAVLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQDA
::::.:: ::.:. ::..: :. :::. : :.:. :::. :
CCDS45 ---------------PTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDR
140 150 160 170 180
230 240 250 260 270 280
pF1KSD FGQFMLQHFRQLNSPLHGLERFPDVEAQRRRFLQAGWTACGAVDINEFYHCFLPAEERRR
:::.:....:. . : :.: ..:.:..:.:. :: . .:::. :.:. :: : :
CCDS45 FGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYN-RLPRAEVSR
190 200 210 220 230 240
290 300 310 320 330 340
pF1KSD VENIEPFDEFEEWHLKCAHYFILAASRGDTLSHTLVFPSSEAFPRVNPASPSGVFPASVV
.:..: .::.: . :: . :..:
CCDS45 IESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY
250 260 270
686 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 02:01:55 2016 done: Thu Nov 3 02:01:55 2016
Total Scan time: 2.760 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]