FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0448, 356 aa
  1>>>pF1KSDA0448 356 - 356 aa - 356 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7705+/-0.000905; mu= 13.7880+/- 0.054
 mean_var=66.5540+/-13.431, 0's: 0 Z-trim(105.1): 18  B-trim: 11 in 1/47
 Lambda= 0.157213
 statistics sampled from 8216 (8221) to 8216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS711.1 HS2ST1 gene_id:9653|Hs108|chr1           ( 356) 2393 551.7 3.4e-157
CCDS44171.1 HS2ST1 gene_id:9653|Hs108|chr1         ( 229) 1561 362.9 1.5e-100
CCDS5213.1 UST gene_id:10090|Hs108|chr6            ( 406)  531 129.4 5.2e-30


>>CCDS711.1 HS2ST1 gene_id:9653|Hs108|chr1                (356 aa)
 initn: 2393 init1: 2393 opt: 2393  Z-score: 2935.6  bits: 551.7 E(32554): 3.4e-157
Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KSD MGLLRIMMPPKLQLLAVVAFAVAMLFLENQIQKLEESRSKLERAIARHEVREIEQRHTMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MGLLRIMMPPKLQLLAVVAFAVAMLFLENQIQKLEESRSKLERAIARHEVREIEQRHTMD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GPRQDATLDEEEDMVIIYNRVPKTASTSFTNIAYDLCAKNKYHVLHINTTKNNPVMSLQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GPRQDATLDEEEDMVIIYNRVPKTASTSFTNIAYDLCAKNKYHVLHINTTKNNPVMSLQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QVRFVKNITSWKEMKPGFYHGHVSYLDFAKFGVKKKPIYINVIRDPIERLVSYYYFLRFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 QVRFVKNITSWKEMKPGFYHGHVSYLDFAKFGVKKKPIYINVIRDPIERLVSYYYFLRFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DDYRPGLRRRKQGDKKTFDECVAEGGSDCAPEKLWLQIPFFCGHSSECWNVGSRWAMDQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DDYRPGLRRRKQGDKKTFDECVAEGGSDCAPEKLWLQIPFFCGHSSECWNVGSRWAMDQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KYNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATELYRTGKKSHLRKTTEKKLPTKQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 KYNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATELYRTGKKSHLRKTTEKKLPTKQT
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KSD IAKLQQSDIWKMENEFYEFALEQFQFIRAHAVREKDGDLYILAQNFFYEKIYPKSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 IAKLQQSDIWKMENEFYEFALEQFQFIRAHAVREKDGDLYILAQNFFYEKIYPKSN
              310       320       330       340       350      

>>CCDS44171.1 HS2ST1 gene_id:9653|Hs108|chr1              (229 aa)
 initn: 1561 init1: 1561 opt: 1561  Z-score: 1918.8  bits: 362.9 E(32554): 1.5e-100
Smith-Waterman score: 1561; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KSD MGLLRIMMPPKLQLLAVVAFAVAMLFLENQIQKLEESRSKLERAIARHEVREIEQRHTMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGLLRIMMPPKLQLLAVVAFAVAMLFLENQIQKLEESRSKLERAIARHEVREIEQRHTMD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GPRQDATLDEEEDMVIIYNRVPKTASTSFTNIAYDLCAKNKYHVLHINTTKNNPVMSLQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GPRQDATLDEEEDMVIIYNRVPKTASTSFTNIAYDLCAKNKYHVLHINTTKNNPVMSLQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QVRFVKNITSWKEMKPGFYHGHVSYLDFAKFGVKKKPIYINVIRDPIERLVSYYYFLRFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QVRFVKNITSWKEMKPGFYHGHVSYLDFAKFGVKKKPIYINVIRDPIERLVSYYYFLRFG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DDYRPGLRRRKQGDKKTFDECVAEGGSDCAPEKLWLQIPFFCGHSSECWNVGSRWAMDQA
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS44 DDYRPGLRRRKQGDKKTFDECVAEGGSDCAPEKLWLQIPFFCGHSSECW           
              190       200       210       220                    

              250       260       270       280       290       300
pF1KSD KYNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATELYRTGKKSHLRKTTEKKLPTKQT

>>CCDS5213.1 UST gene_id:10090|Hs108|chr6                 (406 aa)
 initn: 437 init1: 165 opt: 531  Z-score: 652.2  bits: 129.4 E(32554): 5.2e-30
Smith-Waterman score: 531; 32.1% identity (68.3% similar) in 265 aa overlap (76-328:105-359)

          50        60        70        80        90       100     
pF1KSD ARHEVREIEQRHTMDGPRQDATLDEEEDMVIIYNRVPKTASTSFTNIAYDLCAKNKYHVL
                                     ..:::: : .: . . .   :  :. ....
CCDS52 LLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLV
           80        90       100       110       120       130    

         110       120       130       140       150       160     
pF1KSD HINTTKNNPVMSLQDQVRFVKNITSWKEMKPGFYHGHVSYLDFAKFGVKKKPIYINVIRD
         .  .:.  .. ..:....:::.. .  .: ..  :: .:.:..::   .:.:::.:::
CCDS52 -TSDIHNKTRLTKNEQMELIKNISTAE--QPYLFTRHVHFLNFSRFG-GDQPVYINIIRD
           140       150       160         170        180       190

         170       180                190       200       210      
pF1KSD PIERLVSYYYFLRFGDDYR---------PGLRRRKQGDKKTFDECVAEGGSDCAPEKLWL
       :..:..: :.: :::: .:         :..:....     ..::. :.  .:.  .:. 
CCDS52 PVNRFLSNYFFRRFGD-WRGEQNHMIRTPSMRQEER--YLDINECILENYPECSNPRLFY
              200        210       220         230       240       

        220       230       240       250       260       270      
pF1KSD QIPFFCGHSSECWNVGSRWAMDQAKYNLINEYFLVGVTEELEDFIMLLEAALPRFFRGAT
        ::.:::.  .: . : .::...:: :. ....:::. ::::: ..:::  ::..:.:. 
CCDS52 IIPYFCGQHPRCREPG-EWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVL
       250       260        270       280       290       300      

        280          290       300       310       320       330   
pF1KSD ELYRTG---KKSHLRKTTEKKLPTKQTIAKLQQSDIWKMENEFYEFALEQFQFIRAHAVR
        .:.     : ...  :..: .:. ...  : :    ..: :::... :::....     
CCDS52 SIYKDPEHRKLGNMTVTVKKTVPSPEAVQILYQR--MRYEYEFYHYVKEQFHLLKRKFGL
        310       320       330       340         350       360    

           340       350                         
pF1KSD EKDGDLYILAQNFFYEKIYPKSN                   
                                                 
CCDS52 KSHVSKPPLRPHFFIPTPLETEEPIDDEEQDDEKWLEDIYKR
          370       380       390       400      




356 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:46:08 2016 done: Thu Nov  3 01:46:08 2016
 Total Scan time:  1.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]