FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0229, 608 aa
  1>>>pF1KF0229 608 - 608 aa - 608 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5016+/-0.000787; mu= 18.5709+/- 0.048
 mean_var=75.4953+/-15.017, 0's: 0 Z-trim(109.3): 12  B-trim: 0 in 0/51
 Lambda= 0.147610
 statistics sampled from 10801 (10805) to 10801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.332), width:  16
 Scan time:  3.760

The best scores are:                                      opt bits E(32554)
CCDS33773.1 DENND6A gene_id:201627|Hs108|chr3      ( 608) 4125 887.9       0
CCDS46732.1 DENND6B gene_id:414918|Hs108|chr22     ( 585) 2434 527.8 1.5e-149


>>CCDS33773.1 DENND6A gene_id:201627|Hs108|chr3           (608 aa)
 initn: 4125 init1: 4125 opt: 4125  Z-score: 4744.1  bits: 887.9 E(32554):    0
Smith-Waterman score: 4125; 99.8% identity (100.0% similar) in 608 aa overlap (1-608:1-608)

               10        20        30        40        50        60
pF1KF0 MALRGPAGLGPGSRRPLDEAVAGAEGREAPALVAAGGAPEDDEEDDGRGRGLLRWDSFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MALRGPAGLGPGSRRPLDEAVAGAEGREAPALVAAGGAPEDDEEDDGRGRGLLRWDSFSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 WLHCVCVVGFDLELGQAVEVIYPQHSKLTDREKTNICYLSFPDSNSGCLGDTQFCFRFRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WLHCVCVVGFDLELGQAVEVIYPQHSKLTDREKTNICYLSFPDSNSGCLGDTQFCFRFRQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 SSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 YIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMAVVMKVRIPTCH
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS33 YIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGVVMKVRIPTCH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 DKPGTTQIVQLTQQVDTNISVILPTVHEVDIFRCFCPVFLHSQMLWELVLLGEPLVVMAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DKPGTTQIVQLTQQVDTNISVILPTVHEVDIFRCFCPVFLHSQMLWELVLLGEPLVVMAP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KF0 SPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KF0 TLQHWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLQHWPHIIRIGDLKPTGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KF0 KGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KGVQQKRPSEAQSVILRRYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KF0 EFMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EFMKTLEKTGPQLTSRIKGDWIGLYRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KF0 DLLLWIQKHTEVETVDLVLKLKNKLLQADREHLPVKPDTMEKLRTHIDAIILALPEDLQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLLLWIQKHTEVETVDLVLKLKNKLLQADREHLPVKPDTMEKLRTHIDAIILALPEDLQG
              550       560       570       580       590       600

               
pF1KF0 ILLKTGMT
       ::::::::
CCDS33 ILLKTGMT
               

>>CCDS46732.1 DENND6B gene_id:414918|Hs108|chr22          (585 aa)
 initn: 2469 init1: 2434 opt: 2434  Z-score: 2798.2  bits: 527.8 E(32554): 1.5e-149
Smith-Waterman score: 2434; 60.6% identity (87.2% similar) in 548 aa overlap (55-602:35-582)

           30        40        50        60        70        80    
pF1KF0 EGREAPALVAAGGAPEDDEEDDGRGRGLLRWDSFSAWLHCVCVVGFDLELGQAVEVIYPQ
                                     :  :::::.::::: ::::::::.:..::.
CCDS46 LGTGPRRARGCLGAAGPTSSGRAARTPAAPWARFSAWLECVCVVTFDLELGQALELVYPN
           10        20        30        40        50        60    

           90       100       110       120       130       140    
pF1KF0 HSKLTDREKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKDLPVYLK
         .:::.::..:::::::::.::::::::: ::.:: .:.:   :    ....  :: :.
CCDS46 DFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNSRAPVALQ
           70        80        90       100       110       120    

          150       160       170       180       190       200    
pF1KF0 KDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYL
       ..::...::::::::.:...:::::::::::.:.::....:...:. ::::::.:  : :
CCDS46 REPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYFDKLAPCL
          130       140       150       160       170       180    

          210       220       230       240       250       260    
pF1KF0 EAACNDVDRWPAPVPGKTLHLPIMAVVMKVRIPTCHDKPGTTQIVQLTQQVDTNISVILP
       ::.:...:.::::.::.::.::.:.::..::::.  ::  ..   :. :.      :.: 
CCDS46 EAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLLPAPVVLA
          190       200       210       220       230       240    

          270       280       290       300       310       320    
pF1KF0 TVHEVDIFRCFCPVFLHSQMLWELVLLGEPLVVMAPSPSESSETVLALVNCISPLKYFSD
       .:::.:.:::: ::. : : ::::.::::::.:.::::. ::: ::::..:..::..  :
CCDS46 SVHELDLFRCFRPVLTHMQTLWELMLLGEPLLVLAPSPDVSSEMVLALTSCLQPLRFCCD
          250       260       270       280       290       300    

          330       340       350       360       370       380    
pF1KF0 FRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPHIIRIGDLKPTGEIPKQV
       ::::::::::::::.::::::::.:.:::::::: :::::::::.:.:. : .:..::::
CCDS46 FRPYFTIHDSEFKEFTTRTQAPPNVVLGVTNPFFIKTLQHWPHILRVGEPKMSGDLPKQV
          310       320       330       340       350       360    

          390       400       410       420       430       440    
pF1KF0 KVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGVQQKRPSEAQSVILRRYFLELT
       :.:: . :::::.:::.::.:  .:.::. ..:.: ::::.::::..::..:::..::::
CCDS46 KLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQKKRPSDVQSALLRRHLLELT
          370       380       390       400       410       420    

          450       460       470       480       490       500    
pF1KF0 QSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSRIKGDWIGL
       ::::::::.:.::::::::::.:::.:::.. :  ..:...::..:::::  .::::.::
CCDS46 QSFIIPLEHYMASLMPLQKSITPWKTPPQIQPFSQDDFLRSLEHAGPQLTCILKGDWLGL
          430       440       450       460       470       480    

          510       520       530       540       550       560    
pF1KF0 YRHFLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNK
       ::.:.:::.::::.. :.:::. :::::::::.:: ..  :.. ..:::.:::::::..:
CCDS46 YRRFFKSPHFDGWYRQRHKEMALKLEALHLEAICEANIETWMKDKSEVEVVDLVLKLREK
          490       500       510       520       530       540    

          570       580       590       600        
pF1KF0 LLQADREHLPVKPDTMEKLRTHIDAIILALPEDLQGILLKTGMT
       :..:. ..::::  :... . .:...: .::.:::..:      
CCDS46 LVRAQGHQLPVKEATLQRAQLYIETVIGSLPKDLQAVLCPP   
          550       560       570       580        




608 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:26:44 2016 done: Thu Nov  3 19:26:44 2016
 Total Scan time:  3.760 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]