FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0165, 270 aa
  1>>>pF1KF0165 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3153+/-0.00026; mu= 17.3654+/- 0.016
 mean_var=91.3322+/-18.282, 0's: 0 Z-trim(122.5): 8  B-trim: 0 in 0/51
 Lambda= 0.134203
 statistics sampled from 40619 (40631) to 40619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.476), width:  16
 Scan time:  7.880

The best scores are:                                      opt bits E(85289)
NP_666017 (OMIM: 608740) NFAT activation molecule  ( 270) 1864 369.8 2.9e-102
XP_005261431 (OMIM: 608740) PREDICTED: NFAT activa ( 218) 1496 298.5   7e-81
NP_001305252 (OMIM: 608740) NFAT activation molecu ( 198) 1075 216.9 2.3e-56


>>NP_666017 (OMIM: 608740) NFAT activation molecule 1 is  (270 aa)
 initn: 1864 init1: 1864 opt: 1864  Z-score: 1956.9  bits: 369.8 E(85289): 2.9e-102
Smith-Waterman score: 1864; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KF0 MENQPVRWRALPGLPRPPGLPAAPWLLLGVLLLPGTLRLAGGQSVTHTGLPIMASLANTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_666 MENQPVRWRALPGLPRPPGLPAAPWLLLGVLLLPGTLRLAGGQSVTHTGLPIMASLANTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 ISFSCRITYPYTPQFKVFTVSYFHEDLQGQRSPKKPTNCHPGLGTENQSHTLDCQVTLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_666 ISFSCRITYPYTPQFKVFTVSYFHEDLQGQRSPKKPTNCHPGLGTENQSHTLDCQVTLVL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PGASATGTYYCSVHWPHSTVRGSGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_666 PGASATGTYYCSVHWPHSTVRGSGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 TALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHPSESVYTALQRRETEVYACIENEDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_666 TALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHPSESVYTALQRRETEVYACIENEDGS
              190       200       210       220       230       240

              250       260       270
pF1KF0 SPTAKQSPLSQERPHRFEDDGELNLVYENL
       ::::::::::::::::::::::::::::::
NP_666 SPTAKQSPLSQERPHRFEDDGELNLVYENL
              250       260       270

>>XP_005261431 (OMIM: 608740) PREDICTED: NFAT activation  (218 aa)
 initn: 1496 init1: 1496 opt: 1496  Z-score: 1573.0  bits: 298.5 E(85289): 7e-81
Smith-Waterman score: 1496; 100.0% identity (100.0% similar) in 218 aa overlap (53-270:1-218)

             30        40        50        60        70        80  
pF1KF0 APWLLLGVLLLPGTLRLAGGQSVTHTGLPIMASLANTAISFSCRITYPYTPQFKVFTVSY
                                     ::::::::::::::::::::::::::::::
XP_005                               MASLANTAISFSCRITYPYTPQFKVFTVSY
                                             10        20        30

             90       100       110       120       130       140  
pF1KF0 FHEDLQGQRSPKKPTNCHPGLGTENQSHTLDCQVTLVLPGASATGTYYCSVHWPHSTVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHEDLQGQRSPKKPTNCHPGLGTENQSHTLDCQVTLVLPGASATGTYYCSVHWPHSTVRG
               40        50        60        70        80        90

            150       160       170       180       190       200  
pF1KF0 SGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVGTALLLWNKKRMRGPGKDPTRKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVGTALLLWNKKRMRGPGKDPTRKC
              100       110       120       130       140       150

            210       220       230       240       250       260  
pF1KF0 PDPRSASSPKQHPSESVYTALQRRETEVYACIENEDGSSPTAKQSPLSQERPHRFEDDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDPRSASSPKQHPSESVYTALQRRETEVYACIENEDGSSPTAKQSPLSQERPHRFEDDGE
              160       170       180       190       200       210

            270
pF1KF0 LNLVYENL
       ::::::::
XP_005 LNLVYENL
               

>>NP_001305252 (OMIM: 608740) NFAT activation molecule 1  (198 aa)
 initn: 1110 init1: 1055 opt: 1075  Z-score: 1133.1  bits: 216.9 E(85289): 2.3e-56
Smith-Waterman score: 1075; 96.9% identity (97.5% similar) in 161 aa overlap (1-159:1-161)

               10        20        30        40        50        60
pF1KF0 MENQPVRWRALPGLPRPPGLPAAPWLLLGVLLLPGTLRLAGGQSVTHTGLPIMASLANTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENQPVRWRALPGLPRPPGLPAAPWLLLGVLLLPGTLRLAGGQSVTHTGLPIMASLANTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 ISFSCRITYPYTPQFKVFTVSYFHEDLQGQRSPKKPTNCHPGLGTENQSHTLDCQVTLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISFSCRITYPYTPQFKVFTVSYFHEDLQGQRSPKKPTNCHPGLGTENQSHTLDCQVTLVL
               70        80        90       100       110       120

              130       140       150         160       170        
pF1KF0 PGASATGTYYCSVHWPHSTVRGSGTFILVR--DAGYREPPQSPQKLLLFGFTGLLSVLSV
       ::::::::::::::::::::::::::::::  ::: :: :.                   
NP_001 PGASATGTYYCSVHWPHSTVRGSGTFILVREADAGSREGPHQEVPRSKICQQPQAASFRI
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KF0 VGTALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHPSESVYTALQRRETEVYACIENED
                                                                   
NP_001 CLHSSAAPRDRGLCLHRE                                          
              190                                                  




270 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:07:38 2016 done: Fri Nov  4 20:07:39 2016
 Total Scan time:  7.880 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]