FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0165, 270 aa
  1>>>pF1KF0165 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2685+/-0.000568; mu= 17.5767+/- 0.035
 mean_var=89.0256+/-17.989, 0's: 0 Z-trim(115.3): 6  B-trim: 0 in 0/51
 Lambda= 0.135930
 statistics sampled from 15838 (15843) to 15838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.487), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS14034.1 NFAM1 gene_id:150372|Hs108|chr22       ( 270) 1864 374.3 4.9e-104


>>CCDS14034.1 NFAM1 gene_id:150372|Hs108|chr22            (270 aa)
 initn: 1864 init1: 1864 opt: 1864  Z-score: 1981.3  bits: 374.3 E(32554): 4.9e-104
Smith-Waterman score: 1864; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KF0 MENQPVRWRALPGLPRPPGLPAAPWLLLGVLLLPGTLRLAGGQSVTHTGLPIMASLANTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MENQPVRWRALPGLPRPPGLPAAPWLLLGVLLLPGTLRLAGGQSVTHTGLPIMASLANTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 ISFSCRITYPYTPQFKVFTVSYFHEDLQGQRSPKKPTNCHPGLGTENQSHTLDCQVTLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ISFSCRITYPYTPQFKVFTVSYFHEDLQGQRSPKKPTNCHPGLGTENQSHTLDCQVTLVL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 PGASATGTYYCSVHWPHSTVRGSGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGASATGTYYCSVHWPHSTVRGSGTFILVRDAGYREPPQSPQKLLLFGFTGLLSVLSVVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 TALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHPSESVYTALQRRETEVYACIENEDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TALLLWNKKRMRGPGKDPTRKCPDPRSASSPKQHPSESVYTALQRRETEVYACIENEDGS
              190       200       210       220       230       240

              250       260       270
pF1KF0 SPTAKQSPLSQERPHRFEDDGELNLVYENL
       ::::::::::::::::::::::::::::::
CCDS14 SPTAKQSPLSQERPHRFEDDGELNLVYENL
              250       260       270




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:07:37 2016 done: Fri Nov  4 20:07:37 2016
 Total Scan time:  2.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]