FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6821, 379 aa
  1>>>pF1KE6821     379 - 379 aa - 379 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4578+/-0.000744; mu= 15.9349+/- 0.044
 mean_var=67.6228+/-13.478, 0's: 0 Z-trim(108.3): 11  B-trim: 5 in 1/50
 Lambda= 0.155965
 statistics sampled from 10263 (10264) to 10263 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.307), width:  16
 Scan time:  1.360

The best scores are:                                      opt bits E(33420)
CCDS4215.1 TMEM173 gene_id:340061|Hs109|chr5       ( 379) 2530 578.1 4.6e-165


>>CCDS4215.1 TMEM173 gene_id:340061|Hs109|chr5            (379 aa)
 initn: 2530 init1: 2530 opt: 2530  Z-score: 3077.0  bits: 578.1 E(33420): 4.6e-165
Smith-Waterman score: 2530; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE6 MPHSSLHPSIPCPRGHGAQKAALVLLSACLVTLWGLGEPPEHTLRYLVLHLASLQLGLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPHSSLHPSIPCPRGHGAQKAALVLLSACLVTLWGLGEPPEHTLRYLVLHLASLQLGLLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NGVCSLAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NGVCSLAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LALLGLSQALNILLGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LALLGLSQALNILLGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 TYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 DAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DAPESQNNCRLIAYQEPADDSSFSLSQEVLRHLRQEEKEEVTVGSLKTSAVPSTSTMSQE
              310       320       330       340       350       360

              370         
pF1KE6 PELLISGMEKPLPLRTDFS
       :::::::::::::::::::
CCDS42 PELLISGMEKPLPLRTDFS
              370         




379 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Jun 19 14:31:58 2019 done: Wed Jun 19 14:31:58 2019
 Total Scan time:  1.360 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]