FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6507, 210 aa
  1>>>pF1KE6507     210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8808+/-0.00066; mu= 16.3837+/- 0.040
 mean_var=65.5695+/-12.929, 0's: 0 Z-trim(110.6): 8  B-trim: 0 in 0/50
 Lambda= 0.158388
 statistics sampled from 11865 (11872) to 11865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.355), width:  16
 Scan time:  1.100

The best scores are:                                      opt bits E(33420)
CCDS6626.1 FXN gene_id:2395|Hs109|chr9             ( 210) 1393 326.4 8.4e-90
CCDS43834.1 FXN gene_id:2395|Hs109|chr9            ( 196) 1063 250.9   4e-67


>>CCDS6626.1 FXN gene_id:2395|Hs109|chr9                  (210 aa)
 initn: 1393 init1: 1393 opt: 1393  Z-score: 1725.9  bits: 326.4 E(33420): 8.4e-90
Smith-Waterman score: 1393; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KE6 MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGV
              130       140       150       160       170       180

              190       200       210
pF1KE6 SLHELLAAELTKALKTKLDLSSLAYSGKDA
       ::::::::::::::::::::::::::::::
CCDS66 SLHELLAAELTKALKTKLDLSSLAYSGKDA
              190       200       210

>>CCDS43834.1 FXN gene_id:2395|Hs109|chr9                 (196 aa)
 initn: 1063 init1: 1063 opt: 1063  Z-score: 1318.8  bits: 250.9 E(33420): 4e-67
Smith-Waterman score: 1063; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KE6 MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MWTLGRRAVAGLLASPSPAQAQTLTRVPRPAELAPLCGRRGLRTDIDATCTPRRASSNQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GLNQIWNVKKQSVYLMNLRKSGTLGHPGSLDETTYERLAEETLDSLAEFFEDLADKPYTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGV
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS43 EDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSRYVVDLSVMTGLGKTGCTPT
              130       140       150       160       170       180

              190       200       210
pF1KE6 SLHELLAAELTKALKTKLDLSSLAYSGKDA
                                     
CCDS43 TACPSMSCWPQSSLKP              
              190                    




210 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:42:59 2019 done: Thu Oct 24 21:42:59 2019
 Total Scan time:  1.100 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]