FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3281, 712 aa
  1>>>pF1KE3281 712 - 712 aa - 712 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7151+/-0.00212; mu= -13.2091+/- 0.116
 mean_var=551.1968+/-131.393, 0's: 0 Z-trim(101.9): 309  B-trim: 0 in 0/47
 Lambda= 0.054629
 statistics sampled from 6509 (6731) to 6509 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.545), E-opt: 0.2 (0.207), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS46781.1 NEK10 gene_id:152110|Hs108|chr3        ( 712) 4627 381.7 2.1e-105


>>CCDS46781.1 NEK10 gene_id:152110|Hs108|chr3             (712 aa)
 initn: 4627 init1: 4627 opt: 4627  Z-score: 2006.0  bits: 381.7 E(32554): 2.1e-105
Smith-Waterman score: 4627; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:1-712)

               10        20        30        40        50        60
pF1KE3 MPDQDKKVKTTEKSTDKQQEITIRDYSDLKRLRCLLNVQSSKQQLPAINFDSAQNSMTKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPDQDKKVKTTEKSTDKQQEITIRDYSDLKRLRCLLNVQSSKQQLPAINFDSAQNSMTKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EPAIRAGGHRARGQWHESTEAVELENFSINYKNERNFSKHPQRKLFQEIFTALVKNRLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EPAIRAGGHRARGQWHESTEAVELENFSINYKNERNFSKHPQRKLFQEIFTALVKNRLIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 REWVNRAPSIHFLRVLICLRLLMRDPCYQEILHSLGGIENLAQYMEIVANEYLGYGEEQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 REWVNRAPSIHFLRVLICLRLLMRDPCYQEILHSLGGIENLAQYMEIVANEYLGYGEEQH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TVDKLVNMTYIFQKLAAVKDQREWVTTSGAHKTLVNLLGARDTNVLLGSLLALASLAESQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TVDKLVNMTYIFQKLAAVKDQREWVTTSGAHKTLVNLLGARDTNVLLGSLLALASLAESQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 ECREKISELNIVENLLMILHEYDLLSKRLTAELLRLLCAEPQVKEQVKLYEGIPVLLSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ECREKISELNIVENLLMILHEYDLLSKRLTAELLRLLCAEPQVKEQVKLYEGIPVLLSLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 HSDHLKLLWSIVWILVQVCEDPETSVEIRIWGGIKQLLHILQGDRNFVSDHSSIGSLSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HSDHLKLLWSIVWILVQVCEDPETSVEIRIWGGIKQLLHILQGDRNFVSDHSSIGSLSSA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 NAAGRIQQLHLSEDLSPREIQENTFSLQAACCAALTELVLNDTNAHQVVQENGVYTIAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NAAGRIQQLHLSEDLSPREIQENTFSLQAACCAALTELVLNDTNAHQVVQENGVYTIAKL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 ILPNKQKNAAKSNLLQCYAFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYVRDISA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILPNKQKNAAKSNLLQCYAFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYVRDISA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 YEELVSKLNLLVEDELKQIAENIESINQNKAPLKYIGNYAILDHLGSGAFGCVYKVRKHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YEELVSKLNLLVEDELKQIAENIESINQNKAPLKYIGNYAILDHLGSGAFGCVYKVRKHS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 GQNLLAMKEVNLHNPAFGKDKKDRDSSVRNIVSELTIIKEQLYHPNIVRYYKTFLENDRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GQNLLAMKEVNLHNPAFGKDKKDRDSSVRNIVSELTIIKEQLYHPNIVRYYKTFLENDRL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 YIVMELIEGAPLGEHFSSLKEKHHHFTEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YIVMELIEGAPLGEHFSSLKEKHHHFTEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNN
              610       620       630       640       650       660

              670       680       690       700       710  
pF1KE3 IMLGDKDKVTVTDFGLAKQKQENSKLTSVVGTILYSCVQHLYLRSPAPALAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IMLGDKDKVTVTDFGLAKQKQENSKLTSVVGTILYSCVQHLYLRSPAPALAT
              670       680       690       700       710  




712 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:53:02 2016 done: Sun Nov  6 17:53:03 2016
 Total Scan time:  3.530 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]