FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3190, 442 aa
  1>>>pF1KE3190     442 - 442 aa - 442 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3487+/-0.000785; mu= 17.9369+/- 0.047
 mean_var=73.5535+/-14.788, 0's: 0 Z-trim(107.5): 16  B-trim: 0 in 0/54
 Lambda= 0.149545
 statistics sampled from 9741 (9748) to 9741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.292), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(33420)
CCDS2562.1 CRBN gene_id:51185|Hs109|chr3           ( 442) 3032 663.4 1.3e-190
CCDS54547.1 CRBN gene_id:51185|Hs109|chr3          ( 441) 3015 659.8 1.6e-189


>>CCDS2562.1 CRBN gene_id:51185|Hs109|chr3                (442 aa)
 initn: 3032 init1: 3032 opt: 3032  Z-score: 3536.0  bits: 663.4 E(33420): 1.3e-190
Smith-Waterman score: 3032; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442)

               10        20        30        40        50        60
pF1KE3 MAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 AVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS
              370       380       390       400       410       420

              430       440  
pF1KE3 ALLPTIPDTEDEISPDKVILCL
       ::::::::::::::::::::::
CCDS25 ALLPTIPDTEDEISPDKVILCL
              430       440  

>>CCDS54547.1 CRBN gene_id:51185|Hs109|chr3               (441 aa)
 initn: 2869 init1: 2869 opt: 3015  Z-score: 3516.2  bits: 659.8 E(33420): 1.6e-189
Smith-Waterman score: 3015; 99.8% identity (99.8% similar) in 442 aa overlap (1-442:1-441)

               10        20        30        40        50        60
pF1KE3 MAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYL
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS54 MAGEGDQQDAAHNMGNHLPLLP-ESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYL
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KE3 GADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTF
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE3 AVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQA
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE3 KVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSW
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KE3 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLK
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KE3 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETL
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KE3 TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRS
     360       370       380       390       400       410         

              430       440  
pF1KE3 ALLPTIPDTEDEISPDKVILCL
       ::::::::::::::::::::::
CCDS54 ALLPTIPDTEDEISPDKVILCL
     420       430       440 




442 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Jul 14 21:18:08 2018 done: Sat Jul 14 21:18:08 2018
 Total Scan time:  1.310 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]