FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3103, 269 aa
  1>>>pF1KE3103     269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2797+/-0.000792; mu= 1.5284+/- 0.048
 mean_var=288.7549+/-57.645, 0's: 0 Z-trim(118.5): 9  B-trim: 201 in 1/54
 Lambda= 0.075476
 statistics sampled from 19725 (19733) to 19725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.59), width:  16
 Scan time:  1.360

The best scores are:                                      opt bits E(33420)
CCDS6142.1 CEBPD gene_id:1052|Hs109|chr8           ( 269) 1864 214.9   5e-56


>>CCDS6142.1 CEBPD gene_id:1052|Hs109|chr8                (269 aa)
 initn: 1864 init1: 1864 opt: 1864  Z-score: 1119.6  bits: 214.9 E(33420): 5e-56
Smith-Waterman score: 1864; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KE3 MSAALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MSAALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FSAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 FSAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 REPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 REPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 SAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQL
              190       200       210       220       230       240

              250       260         
pF1KE3 TRDLAGLRQFFKQLPSPPFLPAAGTADCR
       :::::::::::::::::::::::::::::
CCDS61 TRDLAGLRQFFKQLPSPPFLPAAGTADCR
              250       260         




269 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Feb 19 20:42:51 2021 done: Fri Feb 19 20:42:52 2021
 Total Scan time:  1.360 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]