Result of FASTA (ccds) for
pF1KE2761
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2761, 835 aa
1>>>pF1KE2761 835 - 835 aa - 835 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5432+/-0.00116; mu= 18.7806+/- 0.070
mean_var=61.8144+/-12.432, 0's: 0 Z-trim(101.1): 22 B-trim: 97 in 1/47
Lambda= 0.163128
statistics sampled from 6475 (6483) to 6475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.544), E-opt: 0.2 (0.194), width: 16
Scan time: 1.800
The best scores are: opt bits E(33420)
CCDS47234.1 HMGCR gene_id:3156|Hs109|chr5 ( 835) 5428 1286.9 0
CCDS4027.1 HMGCR gene_id:3156|Hs109|chr5 ( 888) 3420 814.3 0
>>CCDS47234.1 HMGCR gene_id:3156|Hs109|chr5 (835 aa)
initn: 5428 init1: 5428 opt: 5428 Z-score: 6895.4 bits: 1286.9 E(33420): 0
Smith-Waterman score: 5428; 100.0% identity (100.0% similar) in 835 aa overlap (1-835:1-835)
10 20 30 40 50 60
pF1KE2 MLSRLFRMHGLFVASHPWEVIVGTVTLTICMMSMNMFTGNNKICGWNYECPKFEEDVLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLSRLFRMHGLFVASHPWEVIVGTVTLTICMMSMNMFTGNNKICGWNYECPKFEEDVLSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 DIIILTITRCIAILYIYFQFQNLRQLGSKYILGIAGLFTIFSSFVFSTVVIHFLDKELTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DIIILTITRCIAILYIYFQFQNLRQLGSKYILGIAGLFTIFSSFVFSTVVIHFLDKELTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 VGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESREGRPIWQLSHFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESREGRPIWQLSHFAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 VLEEEENKPNPVTQRVKMIMSLGLVLVHAHSRWIADPSPQNSTADTSKVSLGLDENVSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VLEEEENKPNPVTQRVKMIMSLGLVLVHAHSRWIADPSPQNSTADTSKVSLGLDENVSKR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 IEPSVSLWQFYLSKMISMDIEQVITLSLALLLAVKYIFFEQTETESTLSLKNPITSPVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IEPSVSLWQFYLSKMISMDIEQVITLSLALLLAVKYIFFEQTETESTLSLKNPITSPVVT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 QKKVPDNCCRREPMLVRNNQKCDSVEEETGINRERKVEVIKPLVAETDTPNRATFVVGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QKKVPDNCCRREPMLVRNNQKCDSVEEETGINRERKVEVIKPLVAETDTPNRATFVVGNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 SLLDTSSVLVTQEPEIELPREPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SLLDTSSVLVTQEPEIELPREPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLLGGGASSRVLADGMTRGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLLGGGASSRVLADGMTRGPV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 VRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 AMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 AKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 SSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGE
730 740 750 760 770 780
790 800 810 820 830
pF1KE2 NARQLARIVCGTVMAGELSLMAALAAGHLVKSHMIHNRSKINLQDLQGACTKKTA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NARQLARIVCGTVMAGELSLMAALAAGHLVKSHMIHNRSKINLQDLQGACTKKTA
790 800 810 820 830
>>CCDS4027.1 HMGCR gene_id:3156|Hs109|chr5 (888 aa)
initn: 3393 init1: 3393 opt: 3420 Z-score: 4341.0 bits: 814.3 E(33420): 0
Smith-Waterman score: 5175; 93.9% identity (93.9% similar) in 867 aa overlap (1-814:1-867)
10 20 30 40 50 60
pF1KE2 MLSRLFRMHGLFVASHPWEVIVGTVTLTICMMSMNMFTGNNKICGWNYECPKFEEDVLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MLSRLFRMHGLFVASHPWEVIVGTVTLTICMMSMNMFTGNNKICGWNYECPKFEEDVLSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 DIIILTITRCIAILYIYFQFQNLRQLGSKYILGIAGLFTIFSSFVFSTVVIHFLDKELTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DIIILTITRCIAILYIYFQFQNLRQLGSKYILGIAGLFTIFSSFVFSTVVIHFLDKELTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 VGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESREGRPIWQLSHFAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESREGRPIWQLSHFAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 VLEEEENKPNPVTQRVKMIMSLGLVLVHAHSRWIADPSPQNSTADTSKVSLGLDENVSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VLEEEENKPNPVTQRVKMIMSLGLVLVHAHSRWIADPSPQNSTADTSKVSLGLDENVSKR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 IEPSVSLWQFYLSKMISMDIEQVITLSLALLLAVKYIFFEQTETESTLSLKNPITSPVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IEPSVSLWQFYLSKMISMDIEQVITLSLALLLAVKYIFFEQTETESTLSLKNPITSPVVT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 QKKVPDNCCRREPMLVRNNQKCDSVEEETGINRERKVEVIKPLVAETDTPNRATFVVGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QKKVPDNCCRREPMLVRNNQKCDSVEEETGINRERKVEVIKPLVAETDTPNRATFVVGNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 SLLDTSSVLVTQEPEIELPREPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SLLDTSSVLVTQEPEIELPREPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYK
430 440 450 460 470 480
490 500 510 520
pF1KE2 LETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSL-------------------
:::::::::::::::::::::::::::::::::::::::::
CCDS40 LETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGV
490 500 510 520 530 540
530 540
pF1KE2 ----------------------------------LGGGASSRVLADGMTRGPVVRLPRAC
::::::::::::::::::::::::::
CCDS40 AGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRAC
550 560 570 580 590 600
550 560 570 580 590 600
pF1KE2 DSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMI
610 620 630 640 650 660
610 620 630 640 650 660
pF1KE2 SKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREV
670 680 690 700 710 720
670 680 690 700 710 720
pF1KE2 LKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITL
730 740 750 760 770 780
730 740 750 760 770 780
pF1KE2 MEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLAR
790 800 810 820 830 840
790 800 810 820 830
pF1KE2 IVCGTVMAGELSLMAALAAGHLVKSHMIHNRSKINLQDLQGACTKKTA
:::::::::::::::::::::::::::
CCDS40 IVCGTVMAGELSLMAALAAGHLVKSHMIHNRSKINLQDLQGACTKKTA
850 860 870 880
835 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 3 17:23:20 2019 done: Thu Oct 3 17:23:20 2019
Total Scan time: 1.800 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]