FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2755, 133 aa
  1>>>pF1KE2755     133 - 133 aa - 133 aa
Library: /omim/omim.rfq.tfa
  65951994 residues in 93482 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0377+/-0.000322; mu= 12.3447+/- 0.020
 mean_var=59.2804+/-11.882, 0's: 0 Z-trim(114.7): 4  B-trim: 491 in 1/52
 Lambda= 0.166578
 statistics sampled from 25919 (25923) to 25919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.277), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(93482)
XP_016861792 (OMIM: 610280) osteocrin isoform X1 [ ( 133)  847 211.5 3.7e-55
NP_937827 (OMIM: 610280) osteocrin precursor [Homo ( 133)  847 211.5 3.7e-55


>>XP_016861792 (OMIM: 610280) osteocrin isoform X1 [Homo  (133 aa)
 initn: 847 init1: 847 opt: 847  Z-score: 1112.1  bits: 211.5 E(93482): 3.7e-55
Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE2 MLDWRLASAHFILAVTLTLWSSGKVLSVDVTTTEAFDSGVIDVQSTPTVREEKSATDLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLDWRLASAHFILAVTLTLWSSGKVLSVDVTTTEAFDSGVIDVQSTPTVREEKSATDLTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KLLLLDELVSLENDVIETKKKRSFSGFGSPLDRLSAGSVDHKGKQRKVVDHPKRRFGIPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLLLLDELVSLENDVIETKKKRSFSGFGSPLDRLSAGSVDHKGKQRKVVDHPKRRFGIPM
               70        80        90       100       110       120

              130   
pF1KE2 DRIGRNRLSNSRG
       :::::::::::::
XP_016 DRIGRNRLSNSRG
              130   

>>NP_937827 (OMIM: 610280) osteocrin precursor [Homo sap  (133 aa)
 initn: 847 init1: 847 opt: 847  Z-score: 1112.1  bits: 211.5 E(93482): 3.7e-55
Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE2 MLDWRLASAHFILAVTLTLWSSGKVLSVDVTTTEAFDSGVIDVQSTPTVREEKSATDLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 MLDWRLASAHFILAVTLTLWSSGKVLSVDVTTTEAFDSGVIDVQSTPTVREEKSATDLTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KLLLLDELVSLENDVIETKKKRSFSGFGSPLDRLSAGSVDHKGKQRKVVDHPKRRFGIPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 KLLLLDELVSLENDVIETKKKRSFSGFGSPLDRLSAGSVDHKGKQRKVVDHPKRRFGIPM
               70        80        90       100       110       120

              130   
pF1KE2 DRIGRNRLSNSRG
       :::::::::::::
NP_937 DRIGRNRLSNSRG
              130   




133 residues in 1 query   sequences
65951994 residues in 93482 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Jun 30 14:57:42 2019 done: Sun Jun 30 14:57:43 2019
 Total Scan time:  2.840 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]