FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2665, 373 aa
  1>>>pF1KE2665     373 - 373 aa - 373 aa
Library: /omim/omim.rfq.tfa
  61127809 residues in 85815 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0359+/-0.000385; mu= 19.0335+/- 0.024
 mean_var=68.3364+/-13.989, 0's: 0 Z-trim(112.1): 19  B-trim: 226 in 1/52
 Lambda= 0.155149
 statistics sampled from 21013 (21029) to 21013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.245), width:  16
 Scan time:  8.440

The best scores are:                                      opt bits E(85815)
NP_003621 (OMIM: 603164,614882) peroxisomal biogen ( 373) 2410 548.4 9.5e-156


>>NP_003621 (OMIM: 603164,614882) peroxisomal biogenesis  (373 aa)
 initn: 2410 init1: 2410 opt: 2410  Z-score: 2917.2  bits: 548.4 E(85815): 9.5e-156
Smith-Waterman score: 2410; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KE2 MLRSVWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MLRSVWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NQRTCNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTVAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NQRTCNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTVAVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 STCMLVVLLRVQLNIIGGYIYLDNAAVGKNGTTILAPPDVQQQYLSSIQHLLGDGLTELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 STCMLVVLLRVQLNIIGGYIYLDNAAVGKNGTTILAPPDVQQQYLSSIQHLLGDGLTELI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 TVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLCHYMMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKSSSWINKDGSKPLLCHYMMP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVLNTCLNRGFSRLLDNMAEFFR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 PTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLTMEQVKDFAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLTMEQVKDFAAN
              310       320       330       340       350       360

              370   
pF1KE2 VYEAFSTPQQLEK
       :::::::::::::
NP_003 VYEAFSTPQQLEK
              370   




373 residues in 1 query   sequences
61127809 residues in 85815 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jan 12 11:36:49 2017 done: Thu Jan 12 11:36:50 2017
 Total Scan time:  8.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]