Result of FASTA (ccds) for
pF1KE2659
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2659, 490 aa
1>>>pF1KE2659 490 - 490 aa - 490 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1629+/-0.000852; mu= 19.5528+/- 0.051
mean_var=75.2448+/-14.888, 0's: 0 Z-trim(107.5): 16 B-trim: 0 in 0/51
Lambda= 0.147855
statistics sampled from 9620 (9630) to 9620 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.296), width: 16
Scan time: 2.830
The best scores are: opt bits E(32554)
CCDS1600.1 SLC35F3 gene_id:148641|Hs108|chr1 ( 490) 3269 706.8 1.4e-203
CCDS73050.1 SLC35F3 gene_id:148641|Hs108|chr1 ( 421) 2634 571.3 7.2e-163
CCDS76684.1 SLC35F4 gene_id:341880|Hs108|chr14 ( 485) 1509 331.4 1.4e-90
>>CCDS1600.1 SLC35F3 gene_id:148641|Hs108|chr1 (490 aa)
initn: 3269 init1: 3269 opt: 3269 Z-score: 3768.7 bits: 706.8 E(32554): 1.4e-203
Smith-Waterman score: 3269; 100.0% identity (100.0% similar) in 490 aa overlap (1-490:1-490)
10 20 30 40 50 60
pF1KE2 MGIREFPSGAPRGKSIAVGMRRSPDVSPRRLSDISPQLRQLKYLVVDEAIKEDLKWSRSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MGIREFPSGAPRGKSIAVGMRRSPDVSPRRLSDISPQLRQLKYLVVDEAIKEDLKWSRSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 EDLTSGPVGLTSIEERILRITGYYGYQPWAASCKREERPRDSPGPAEAQAPAGVEAGGRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EDLTSGPVGLTSIEERILRITGYYGYQPWAASCKREERPRDSPGPAEAQAPAGVEAGGRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SRRCWTCSRAQLKKIFWGVAVVLCVCSSWAGSTQLAKLTFRKFDAPFTLTWFATNWNFLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SRRCWTCSRAQLKKIFWGVAVVLCVCSSWAGSTQLAKLTFRKFDAPFTLTWFATNWNFLF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 FPLYYVGHVCKSTEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 FPLYYVGHVCKSTEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 IKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 VIGIALVVASASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPIILYFTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VIGIALVVASASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPIILYFTKV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 EYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSIPVNAVIDHYTSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSIPVNAVIDHYTSQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 IVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEPAEGAADLSSGPQSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEPAEGAADLSSGPQSK
430 440 450 460 470 480
490
pF1KE2 NRRARPSFAR
::::::::::
CCDS16 NRRARPSFAR
490
>>CCDS73050.1 SLC35F3 gene_id:148641|Hs108|chr1 (421 aa)
initn: 2634 init1: 2634 opt: 2634 Z-score: 3037.5 bits: 571.3 E(32554): 7.2e-163
Smith-Waterman score: 2634; 100.0% identity (100.0% similar) in 395 aa overlap (96-490:27-421)
70 80 90 100 110 120
pF1KE2 GPVGLTSIEERILRITGYYGYQPWAASCKREERPRDSPGPAEAQAPAGVEAGGRASRRCW
::::::::::::::::::::::::::::::
CCDS73 MKKHSARVAPLSACNSPVLTLTKVEGEERPRDSPGPAEAQAPAGVEAGGRASRRCW
10 20 30 40 50
130 140 150 160 170 180
pF1KE2 TCSRAQLKKIFWGVAVVLCVCSSWAGSTQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TCSRAQLKKIFWGVAVVLCVCSSWAGSTQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYY
60 70 80 90 100 110
190 200 210 220 230 240
pF1KE2 VGHVCKSTEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VGHVCKSTEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKIN
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE2 TTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIA
180 190 200 210 220 230
310 320 330 340 350 360
pF1KE2 LVVASASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPIILYFTKVEYWSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LVVASASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPIILYFTKVEYWSS
240 250 260 270 280 290
370 380 390 400 410 420
pF1KE2 FDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSIPVNAVIDHYTSQIVFNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSIPVNAVIDHYTSQIVFNG
300 310 320 330 340 350
430 440 450 460 470 480
pF1KE2 VRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEPAEGAADLSSGPQSKNRRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEPAEGAADLSSGPQSKNRRAR
360 370 380 390 400 410
490
pF1KE2 PSFAR
:::::
CCDS73 PSFAR
420
>>CCDS76684.1 SLC35F4 gene_id:341880|Hs108|chr14 (485 aa)
initn: 1713 init1: 1469 opt: 1509 Z-score: 1739.8 bits: 331.4 E(32554): 1.4e-90
Smith-Waterman score: 1549; 51.1% identity (73.7% similar) in 476 aa overlap (62-482:2-475)
40 50 60 70 80 90
pF1KE2 SDISPQLRQLKYLVVDEAIKEDLKWSRSVEDLTSGPVGLTSIEERILRITGYYGYQPWAA
:. ..: :...::.::::::::::: : .
CCDS76 MDVKAAPNGVATIEDRILRITGYYGYYPGYS
10 20 30
100 110 120
pF1KE2 S-----------CK-------------REERP----RDSPGPA---EAQAPAGVEAGGRA
: :: :. : .:: .: . :. .:: : :.
CCDS76 SQKSTSRSSVTRCKPGANCPSSHSGISRQLSPLSVTEDSSAPILELQNQGSSGV-CGHRV
40 50 60 70 80 90
130 140 150
pF1KE2 SR------------------------RCWTCSRAQLKKIFWGVAVVLCVCSSWAGSTQLA
: :: .:. :: : ::. ..: : :::.:.::..
CCDS76 ERQNRSADDGTQTHSENSSQENRIKARCLSCTSMVLKGI-WGLLIILSVSSSWVGTTQIV
100 110 120 130 140
160 170 180 190 200 210
pF1KE2 KLTFRKFDAPFTLTWFATNWNFLFFPLYYVGHVCKSTEKQSVKQRYRECCRFFGDNGLTL
:.:...: :: .:::.::::..:::.:: ::. . :::: ...::: :.::..::::
CCDS76 KITYKNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMKKFRECSRIFGEDGLTL
150 160 170 180 190 200
220 230 240 250 260 270
pF1KE2 KVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVR
:.:. ..:::..:::::::::: :.::...::::.:::::::::::::::::.:::::::
CCDS76 KLFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVR
210 220 230 240 250 260
280 290 300 310 320 330
pF1KE2 IVAAILAIAGIVMMTYADGFHSHSVIGIALVVASASMSALYKVLFKLLLGSAKFGEAALF
:::::.::.:::::.:::.::. :.::.:..:.::: :::::::::..::::.::::: :
CCDS76 IVAAIMAITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHF
270 280 290 300 310 320
340 350 360 370 380 390
pF1KE2 LSILGVFNILFITCIPIILYFTKVEYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTY
.: :: ::..::. :.::::::::.:::: .::: :::.. : :.:::..: :...::
CCDS76 VSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVGVVLTY
330 340 350 360 370 380
400 410 420 430 440 450
pF1KE2 PTLMSLGIVLSIPVNAVIDHYTSQIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLT
: :.:.: :::.: ::..: ....:: ::. : ::: .::::.::::::: .....
CCDS76 PILISIGTVLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLPEEWDEITLRFIN
390 400 410 420 430 440
460 470 480 490
pF1KE2 RLKVRKKEEPAEGAADLSSGPQSKNRRARPSFAR
:: .:.:: .. ..: : ....:
CCDS76 SLKEKKSEEHVDDVTDPSIHLRGRGRANGTVSIPLA
450 460 470 480
490 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Jan 20 09:29:01 2017 done: Fri Jan 20 09:29:01 2017
Total Scan time: 2.830 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]