Result of FASTA (ccds) for
pF1KE2506
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2506, 456 aa
1>>>pF1KE2506 456 - 456 aa - 456 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9351+/-0.000873; mu= 14.5355+/- 0.052
mean_var=74.6951+/-14.586, 0's: 0 Z-trim(106.3): 31 B-trim: 5 in 1/51
Lambda= 0.148398
statistics sampled from 8873 (8884) to 8873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.273), width: 16
Scan time: 2.880
The best scores are: opt bits E(32554)
CCDS34057.1 EXOSC9 gene_id:5393|Hs108|chr4 ( 456) 2991 649.8 1.6e-186
CCDS3722.2 EXOSC9 gene_id:5393|Hs108|chr4 ( 439) 2540 553.3 1.8e-157
CCDS31958.1 EXOSC8 gene_id:11340|Hs108|chr13 ( 276) 412 97.6 1.7e-20
CCDS2725.1 EXOSC7 gene_id:23016|Hs108|chr3 ( 291) 371 88.8 7.8e-18
>>CCDS34057.1 EXOSC9 gene_id:5393|Hs108|chr4 (456 aa)
initn: 2991 init1: 2991 opt: 2991 Z-score: 3462.0 bits: 649.8 E(32554): 1.6e-186
Smith-Waterman score: 2991; 100.0% identity (100.0% similar) in 456 aa overlap (1-456:1-456)
10 20 30 40 50 60
pF1KE2 MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 DPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 MLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 APIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDLEDSEKEDDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 APIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDLEDSEKEDDEG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 GGDQAIILDGIKMDTGVEVSDIGSQELGFHHVGQTGLEFLTSDAPIILSDSEEEEMIILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GGDQAIILDGIKMDTGVEVSDIGSQELGFHHVGQTGLEFLTSDAPIILSDSEEEEMIILE
370 380 390 400 410 420
430 440 450
pF1KE2 PDKNPKKIRTQTTSAKQEKAPSKKPVKRRKKKRAAN
::::::::::::::::::::::::::::::::::::
CCDS34 PDKNPKKIRTQTTSAKQEKAPSKKPVKRRKKKRAAN
430 440 450
>>CCDS3722.2 EXOSC9 gene_id:5393|Hs108|chr4 (439 aa)
initn: 2540 init1: 2540 opt: 2540 Z-score: 2940.4 bits: 553.3 E(32554): 1.8e-157
Smith-Waterman score: 2833; 96.3% identity (96.3% similar) in 456 aa overlap (1-456:1-439)
10 20 30 40 50 60
pF1KE2 MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 CELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 DPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 DPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 MLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 APIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDLEDSEKEDDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 APIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDLEDSEKEDDEG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 GGDQAIILDGIKMDTGVEVSDIGSQELGFHHVGQTGLEFLTSDAPIILSDSEEEEMIILE
::::::::::::::::::::::::: ::::::::::::::::::
CCDS37 GGDQAIILDGIKMDTGVEVSDIGSQ-----------------DAPIILSDSEEEEMIILE
370 380 390 400
430 440 450
pF1KE2 PDKNPKKIRTQTTSAKQEKAPSKKPVKRRKKKRAAN
::::::::::::::::::::::::::::::::::::
CCDS37 PDKNPKKIRTQTTSAKQEKAPSKKPVKRRKKKRAAN
410 420 430
>>CCDS31958.1 EXOSC8 gene_id:11340|Hs108|chr13 (276 aa)
initn: 227 init1: 142 opt: 412 Z-score: 481.4 bits: 97.6 E(32554): 1.7e-20
Smith-Waterman score: 412; 29.2% identity (64.0% similar) in 264 aa overlap (11-271:15-272)
10 20 30 40 50
pF1KE2 MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKT
:::: .:. : :::. ..:. ...: : : .:.::.:
CCDS31 MAAGFKTVEPLEYYRRFL----KENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNT
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 RVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNS
:. :. :...:. . .: . :..: . . :. : .. .... ..::
CCDS31 TVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 KCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVT
. :. :.::. :. :: . :: :..::::.:: ..: ..:: . . :.:... .:..
CCDS31 QIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTIN-EETA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE2 LYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICT
: . . :.:. :. .::: :.. : :.:::. .::.. : :.:.:... ..:
CCDS31 LAEVNLKKKSYLNIRTHPVATSFAVFDD-TLLIVDPTGEEEHLATGTLTIVMDEEGKLCC
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 IQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRI
... :: : .. : . : .. :. .:. .....
CCDS31 LHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKPK
240 250 260 270
300 310 320 330 340 350
pF1KE2 TAFKMEKAPIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDLEDS
>>CCDS2725.1 EXOSC7 gene_id:23016|Hs108|chr3 (291 aa)
initn: 355 init1: 262 opt: 371 Z-score: 433.6 bits: 88.8 E(32554): 7.8e-18
Smith-Waterman score: 371; 27.3% identity (60.8% similar) in 293 aa overlap (1-284:1-289)
10 20 30 40 50
pF1KE2 MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRIS---FGTDYGCCIVELGKTRVLG
: . ::. :. .......: :.::: ::: ... .. : :.::.: .:
CCDS27 MASVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 QVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCID
:. :. .:::.. .:: : : .. : :.: :: .:: ... . : . :.. .:
CCDS27 GVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 TESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDE-----V
..::. :. : . ::. ::. ::..:: :::. .:: . : : : : :: .
CCDS27 LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 TLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREIC
: . . : . ::....: :. .. . : .:: . .:: . :....... .
CCDS27 EL-SDDPYDCIRLSVENVP-CI-VTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVT
190 200 210 220 230
240 250 260 270 280 290
pF1KE2 TIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKAL-ENDQKVRKEGGKFGFAESIANQ
... : : ..... . .: .:... . :... ...... . : ::
CCDS27 CMRKVGKGSLDPESIFEMME-TGKRVGKVLHASLQSVVHKEESLGPKRQKVGFLG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE2 RITAFKMEKAPIDTSDVEEKAEEIIAEAEPPSEVVSTPVLWTPGTAQIGEGVENSWGDLE
456 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 03:04:42 2016 done: Tue Nov 8 03:04:42 2016
Total Scan time: 2.880 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]