Result of FASTA (omim) for
pF1KE2445
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2445, 449 aa
1>>>pF1KE2445 449 - 449 aa - 449 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0057+/-0.000481; mu= 14.0395+/- 0.030
mean_var=75.6381+/-15.013, 0's: 0 Z-trim(109.2): 80 B-trim: 21 in 1/50
Lambda= 0.147470
statistics sampled from 17321 (17348) to 17321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.203), width: 16
Scan time: 8.740
The best scores are: opt bits E(85289)
NP_060379 (OMIM: 614917,614922) required for meiot ( 449) 2953 638.2 1.3e-182
NP_001258866 (OMIM: 614917,614922) required for me ( 279) 1835 400.3 3.4e-111
XP_005267097 (OMIM: 614917,614922) PREDICTED: requ ( 238) 1566 343.0 5e-94
XP_016866477 (OMIM: 614917,614922) PREDICTED: requ ( 238) 1566 343.0 5e-94
>>NP_060379 (OMIM: 614917,614922) required for meiotic n (449 aa)
initn: 2953 init1: 2953 opt: 2953 Z-score: 3399.5 bits: 638.2 E(85289): 1.3e-182
Smith-Waterman score: 2953; 100.0% identity (100.0% similar) in 449 aa overlap (1-449:1-449)
10 20 30 40 50 60
pF1KE2 MPATLLRAVARSHHILSKAHQCRRIGHLMLKPLKEFENTTCSTLTIRQSLDLFLPDKTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MPATLLRAVARSHHILSKAHQCRRIGHLMLKPLKEFENTTCSTLTIRQSLDLFLPDKTAS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 GLNKSQILEMNQKKSDTSMLSPLNAARCQDEKAHLPTMKSFGTHRRVTHKPNLLGSKWFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GLNKSQILEMNQKKSDTSMLSPLNAARCQDEKAHLPTMKSFGTHRRVTHKPNLLGSKWFI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KILKRHFSSVSTETFVPKQDFPQVKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KILKRHFSSVSTETFVPKQDFPQVKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 EYHLGNLSQDLASHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EYHLGNLSQDLASHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 DKTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DKTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAIL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 EKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 HRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHL
370 380 390 400 410 420
430 440
pF1KE2 NEKRALRLEWMIVILITIEVMFELGRVFF
:::::::::::::::::::::::::::::
NP_060 NEKRALRLEWMIVILITIEVMFELGRVFF
430 440
>>NP_001258866 (OMIM: 614917,614922) required for meioti (279 aa)
initn: 1835 init1: 1835 opt: 1835 Z-score: 2117.3 bits: 400.3 E(85289): 3.4e-111
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 279 aa overlap (171-449:1-279)
150 160 170 180 190 200
pF1KE2 FPQVKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLASHGYVEVT
::::::::::::::::::::::::::::::
NP_001 MHCTAFATADEYHLGNLSQDLASHGYVEVT
10 20 30
210 220 230 240 250 260
pF1KE2 SLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMKVLEKHEIQPYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMKVLEKHEIQPYE
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE2 IALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEA
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE2 SLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRE
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE2 NLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEV
220 230 240 250 260 270
pF1KE2 MFELGRVFF
:::::::::
NP_001 MFELGRVFF
>>XP_005267097 (OMIM: 614917,614922) PREDICTED: required (238 aa)
initn: 1566 init1: 1566 opt: 1566 Z-score: 1809.1 bits: 343.0 E(85289): 5e-94
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 238 aa overlap (212-449:1-238)
190 200 210 220 230 240
pF1KE2 YHLGNLSQDLASHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKD
::::::::::::::::::::::::::::::
XP_005 MGVENSAKEGDPGTIFFFREGAAVFWNVKD
10 20 30
250 260 270 280 290 300
pF1KE2 KTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILE
40 50 60 70 80 90
310 320 330 340 350 360
pF1KE2 KFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRH
100 110 120 130 140 150
370 380 390 400 410 420
pF1KE2 RINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLN
160 170 180 190 200 210
430 440
pF1KE2 EKRALRLEWMIVILITIEVMFELGRVFF
::::::::::::::::::::::::::::
XP_005 EKRALRLEWMIVILITIEVMFELGRVFF
220 230
>>XP_016866477 (OMIM: 614917,614922) PREDICTED: required (238 aa)
initn: 1566 init1: 1566 opt: 1566 Z-score: 1809.1 bits: 343.0 E(85289): 5e-94
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 238 aa overlap (212-449:1-238)
190 200 210 220 230 240
pF1KE2 YHLGNLSQDLASHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKD
::::::::::::::::::::::::::::::
XP_016 MGVENSAKEGDPGTIFFFREGAAVFWNVKD
10 20 30
250 260 270 280 290 300
pF1KE2 KTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILE
40 50 60 70 80 90
310 320 330 340 350 360
pF1KE2 KFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRH
100 110 120 130 140 150
370 380 390 400 410 420
pF1KE2 RINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLN
160 170 180 190 200 210
430 440
pF1KE2 EKRALRLEWMIVILITIEVMFELGRVFF
::::::::::::::::::::::::::::
XP_016 EKRALRLEWMIVILITIEVMFELGRVFF
220 230
449 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:00:45 2016 done: Mon Nov 7 20:00:47 2016
Total Scan time: 8.740 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]