FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2445, 449 aa
  1>>>pF1KE2445 449 - 449 aa - 449 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2140+/-0.00113; mu= 12.5390+/- 0.068
 mean_var=72.9891+/-14.303, 0's: 0 Z-trim(102.2): 36  B-trim: 0 in 0/51
 Lambda= 0.150122
 statistics sampled from 6811 (6828) to 6811 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.21), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS5232.1 RMND1 gene_id:55005|Hs108|chr6          ( 449) 2953 649.3 2.2e-186
CCDS75539.1 RMND1 gene_id:55005|Hs108|chr6         ( 279) 1835 407.2 1.1e-113


>>CCDS5232.1 RMND1 gene_id:55005|Hs108|chr6               (449 aa)
 initn: 2953 init1: 2953 opt: 2953  Z-score: 3459.6  bits: 649.3 E(32554): 2.2e-186
Smith-Waterman score: 2953; 100.0% identity (100.0% similar) in 449 aa overlap (1-449:1-449)

               10        20        30        40        50        60
pF1KE2 MPATLLRAVARSHHILSKAHQCRRIGHLMLKPLKEFENTTCSTLTIRQSLDLFLPDKTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MPATLLRAVARSHHILSKAHQCRRIGHLMLKPLKEFENTTCSTLTIRQSLDLFLPDKTAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 GLNKSQILEMNQKKSDTSMLSPLNAARCQDEKAHLPTMKSFGTHRRVTHKPNLLGSKWFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GLNKSQILEMNQKKSDTSMLSPLNAARCQDEKAHLPTMKSFGTHRRVTHKPNLLGSKWFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KILKRHFSSVSTETFVPKQDFPQVKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KILKRHFSSVSTETFVPKQDFPQVKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 EYHLGNLSQDLASHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 EYHLGNLSQDLASHGYVEVTSLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 DKTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DKTMKHVMKVLEKHEIQPYEIALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 EKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 EKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 HRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 HRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHL
              370       380       390       400       410       420

              430       440         
pF1KE2 NEKRALRLEWMIVILITIEVMFELGRVFF
       :::::::::::::::::::::::::::::
CCDS52 NEKRALRLEWMIVILITIEVMFELGRVFF
              430       440         

>>CCDS75539.1 RMND1 gene_id:55005|Hs108|chr6              (279 aa)
 initn: 1835 init1: 1835 opt: 1835  Z-score: 2154.4  bits: 407.2 E(32554): 1.1e-113
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 279 aa overlap (171-449:1-279)

              150       160       170       180       190       200
pF1KE2 FPQVKRPLKASRTRQPSRTNLPVLSVNEDLMHCTAFATADEYHLGNLSQDLASHGYVEVT
                                     ::::::::::::::::::::::::::::::
CCDS75                               MHCTAFATADEYHLGNLSQDLASHGYVEVT
                                             10        20        30

              210       220       230       240       250       260
pF1KE2 SLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMKVLEKHEIQPYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLPRDAANILVMGVENSAKEGDPGTIFFFREGAAVFWNVKDKTMKHVMKVLEKHEIQPYE
               40        50        60        70        80        90

              270       280       290       300       310       320
pF1KE2 IALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IALVHWENEELNYIKIEGQSKLHRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEA
              100       110       120       130       140       150

              330       340       350       360       370       380
pF1KE2 SLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLDKFIESIQSIPEALKAGKKVKLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRE
              160       170       180       190       200       210

              390       400       410       420       430       440
pF1KE2 NLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NLEGLYDKTCQFLSIGRRVKVMNEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIEV
              220       230       240       250       260       270

                
pF1KE2 MFELGRVFF
       :::::::::
CCDS75 MFELGRVFF
                




449 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:00:45 2016 done: Mon Nov  7 20:00:45 2016
 Total Scan time:  2.830 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]