FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2444, 441 aa
  1>>>pF1KE2444 441 - 441 aa - 441 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3072+/-0.000411; mu= 17.4650+/- 0.026
 mean_var=70.0144+/-14.136, 0's: 0 Z-trim(110.9): 30  B-trim: 179 in 1/53
 Lambda= 0.153278
 statistics sampled from 19306 (19329) to 19306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.227), width:  16
 Scan time:  7.630

The best scores are:                                      opt bits E(85289)
NP_078849 (OMIM: 616332) protein-glutamate O-methy ( 441) 3013 675.8  6e-194
NP_001273491 (OMIM: 616332) protein-glutamate O-me ( 322) 2222 500.8 2.1e-141


>>NP_078849 (OMIM: 616332) protein-glutamate O-methyltra  (441 aa)
 initn: 3013 init1: 3013 opt: 3013  Z-score: 3602.9  bits: 675.8 E(85289): 6e-194
Smith-Waterman score: 3013; 100.0% identity (100.0% similar) in 441 aa overlap (1-441:1-441)

               10        20        30        40        50        60
pF1KE2 MAVVPASLSGQDVGSFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MAVVPASLSGQDVGSFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LLSKLRNELQTDKPFIPLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LLSKLRNELQTDKPFIPLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 YRRIHEAIIQSPPIDYFDVFKESKEQNFYGSQESIIALCTHLQQLIRTIEDLDENQLKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 YRRIHEAIIQSPPIDYFDVFKESKEQNFYGSQESIIALCTHLQQLIRTIEDLDENQLKDE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 FFKLLQISLWGNKCDLSLSGGESSSQNTNVLNSLEDLKPFILLNDMEHLWSLLSNCKKTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 FFKLLQISLWGNKCDLSLSGGESSSQNTNVLNSLEDLKPFILLNDMEHLWSLLSNCKKTR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 EKASATRVYIVLDNSGFELVTDLILADFLLSSELATEVHFYGKTIPWFVSDTTIHDFNWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 EKASATRVYIVLDNSGFELVTDLILADFLLSSELATEVHFYGKTIPWFVSDTTIHDFNWL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 IEQVKHSNHKWMSKCGADWEEYIKMGKWVYHNHIFWTLPHEYCAMPQVAPDLYAELQKAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 IEQVKHSNHKWMSKCGADWEEYIKMGKWVYHNHIFWTLPHEYCAMPQVAPDLYAELQKAH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LILFKGDLNYRKLTGDRKWEFSVPFHQALNGFHPAPLCTIRTLKAEIQVGLQPGQGEQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LILFKGDLNYRKLTGDRKWEFSVPFHQALNGFHPAPLCTIRTLKAEIQVGLQPGQGEQLL
              370       380       390       400       410       420

              430       440 
pF1KE2 ASEPSWWTTGKYGIFQYDGPL
       :::::::::::::::::::::
NP_078 ASEPSWWTTGKYGIFQYDGPL
              430       440 

>>NP_001273491 (OMIM: 616332) protein-glutamate O-methyl  (322 aa)
 initn: 2222 init1: 2222 opt: 2222  Z-score: 2659.6  bits: 500.8 E(85289): 2.1e-141
Smith-Waterman score: 2222; 100.0% identity (100.0% similar) in 322 aa overlap (120-441:1-322)

      90       100       110       120       130       140         
pF1KE2 QYLEYQQSLLNESDGKSRWFYSPWLLVECYMYRRIHEAIIQSPPIDYFDVFKESKEQNFY
                                     ::::::::::::::::::::::::::::::
NP_001                               MYRRIHEAIIQSPPIDYFDVFKESKEQNFY
                                             10        20        30

     150       160       170       180       190       200         
pF1KE2 GSQESIIALCTHLQQLIRTIEDLDENQLKDEFFKLLQISLWGNKCDLSLSGGESSSQNTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSQESIIALCTHLQQLIRTIEDLDENQLKDEFFKLLQISLWGNKCDLSLSGGESSSQNTN
               40        50        60        70        80        90

     210       220       230       240       250       260         
pF1KE2 VLNSLEDLKPFILLNDMEHLWSLLSNCKKTREKASATRVYIVLDNSGFELVTDLILADFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLNSLEDLKPFILLNDMEHLWSLLSNCKKTREKASATRVYIVLDNSGFELVTDLILADFL
              100       110       120       130       140       150

     270       280       290       300       310       320         
pF1KE2 LSSELATEVHFYGKTIPWFVSDTTIHDFNWLIEQVKHSNHKWMSKCGADWEEYIKMGKWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSSELATEVHFYGKTIPWFVSDTTIHDFNWLIEQVKHSNHKWMSKCGADWEEYIKMGKWV
              160       170       180       190       200       210

     330       340       350       360       370       380         
pF1KE2 YHNHIFWTLPHEYCAMPQVAPDLYAELQKAHLILFKGDLNYRKLTGDRKWEFSVPFHQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHNHIFWTLPHEYCAMPQVAPDLYAELQKAHLILFKGDLNYRKLTGDRKWEFSVPFHQAL
              220       230       240       250       260       270

     390       400       410       420       430       440 
pF1KE2 NGFHPAPLCTIRTLKAEIQVGLQPGQGEQLLASEPSWWTTGKYGIFQYDGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGFHPAPLCTIRTLKAEIQVGLQPGQGEQLLASEPSWWTTGKYGIFQYDGPL
              280       290       300       310       320  




441 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:58:57 2016 done: Mon Nov  7 19:58:59 2016
 Total Scan time:  7.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]