FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2444, 441 aa
  1>>>pF1KE2444 441 - 441 aa - 441 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7990+/-0.00102; mu= 14.4567+/- 0.061
 mean_var=65.9456+/-13.046, 0's: 0 Z-trim(103.6): 29  B-trim: 46 in 1/49
 Lambda= 0.157936
 statistics sampled from 7497 (7507) to 7497 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.231), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS5233.1 ARMT1 gene_id:79624|Hs108|chr6          ( 441) 3013 695.7 2.4e-200
CCDS69224.1 ARMT1 gene_id:79624|Hs108|chr6         ( 322) 2222 515.4 3.2e-146


>>CCDS5233.1 ARMT1 gene_id:79624|Hs108|chr6               (441 aa)
 initn: 3013 init1: 3013 opt: 3013  Z-score: 3710.4  bits: 695.7 E(32554): 2.4e-200
Smith-Waterman score: 3013; 100.0% identity (100.0% similar) in 441 aa overlap (1-441:1-441)

               10        20        30        40        50        60
pF1KE2 MAVVPASLSGQDVGSFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MAVVPASLSGQDVGSFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LLSKLRNELQTDKPFIPLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LLSKLRNELQTDKPFIPLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 YRRIHEAIIQSPPIDYFDVFKESKEQNFYGSQESIIALCTHLQQLIRTIEDLDENQLKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 YRRIHEAIIQSPPIDYFDVFKESKEQNFYGSQESIIALCTHLQQLIRTIEDLDENQLKDE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 FFKLLQISLWGNKCDLSLSGGESSSQNTNVLNSLEDLKPFILLNDMEHLWSLLSNCKKTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 FFKLLQISLWGNKCDLSLSGGESSSQNTNVLNSLEDLKPFILLNDMEHLWSLLSNCKKTR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 EKASATRVYIVLDNSGFELVTDLILADFLLSSELATEVHFYGKTIPWFVSDTTIHDFNWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 EKASATRVYIVLDNSGFELVTDLILADFLLSSELATEVHFYGKTIPWFVSDTTIHDFNWL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 IEQVKHSNHKWMSKCGADWEEYIKMGKWVYHNHIFWTLPHEYCAMPQVAPDLYAELQKAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 IEQVKHSNHKWMSKCGADWEEYIKMGKWVYHNHIFWTLPHEYCAMPQVAPDLYAELQKAH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LILFKGDLNYRKLTGDRKWEFSVPFHQALNGFHPAPLCTIRTLKAEIQVGLQPGQGEQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LILFKGDLNYRKLTGDRKWEFSVPFHQALNGFHPAPLCTIRTLKAEIQVGLQPGQGEQLL
              370       380       390       400       410       420

              430       440 
pF1KE2 ASEPSWWTTGKYGIFQYDGPL
       :::::::::::::::::::::
CCDS52 ASEPSWWTTGKYGIFQYDGPL
              430       440 

>>CCDS69224.1 ARMT1 gene_id:79624|Hs108|chr6              (322 aa)
 initn: 2222 init1: 2222 opt: 2222  Z-score: 2738.6  bits: 515.4 E(32554): 3.2e-146
Smith-Waterman score: 2222; 100.0% identity (100.0% similar) in 322 aa overlap (120-441:1-322)

      90       100       110       120       130       140         
pF1KE2 QYLEYQQSLLNESDGKSRWFYSPWLLVECYMYRRIHEAIIQSPPIDYFDVFKESKEQNFY
                                     ::::::::::::::::::::::::::::::
CCDS69                               MYRRIHEAIIQSPPIDYFDVFKESKEQNFY
                                             10        20        30

     150       160       170       180       190       200         
pF1KE2 GSQESIIALCTHLQQLIRTIEDLDENQLKDEFFKLLQISLWGNKCDLSLSGGESSSQNTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GSQESIIALCTHLQQLIRTIEDLDENQLKDEFFKLLQISLWGNKCDLSLSGGESSSQNTN
               40        50        60        70        80        90

     210       220       230       240       250       260         
pF1KE2 VLNSLEDLKPFILLNDMEHLWSLLSNCKKTREKASATRVYIVLDNSGFELVTDLILADFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VLNSLEDLKPFILLNDMEHLWSLLSNCKKTREKASATRVYIVLDNSGFELVTDLILADFL
              100       110       120       130       140       150

     270       280       290       300       310       320         
pF1KE2 LSSELATEVHFYGKTIPWFVSDTTIHDFNWLIEQVKHSNHKWMSKCGADWEEYIKMGKWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LSSELATEVHFYGKTIPWFVSDTTIHDFNWLIEQVKHSNHKWMSKCGADWEEYIKMGKWV
              160       170       180       190       200       210

     330       340       350       360       370       380         
pF1KE2 YHNHIFWTLPHEYCAMPQVAPDLYAELQKAHLILFKGDLNYRKLTGDRKWEFSVPFHQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 YHNHIFWTLPHEYCAMPQVAPDLYAELQKAHLILFKGDLNYRKLTGDRKWEFSVPFHQAL
              220       230       240       250       260       270

     390       400       410       420       430       440 
pF1KE2 NGFHPAPLCTIRTLKAEIQVGLQPGQGEQLLASEPSWWTTGKYGIFQYDGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NGFHPAPLCTIRTLKAEIQVGLQPGQGEQLLASEPSWWTTGKYGIFQYDGPL
              280       290       300       310       320  




441 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:58:57 2016 done: Mon Nov  7 19:58:57 2016
 Total Scan time:  1.940 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]