Result of FASTA (omim) for
pF1KE2426
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2426, 617 aa
1>>>pF1KE2426 617 - 617 aa - 617 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4725+/-0.000403; mu= 18.3262+/- 0.025
mean_var=70.4740+/-14.303, 0's: 0 Z-trim(111.7): 29 B-trim: 0 in 0/49
Lambda= 0.152778
statistics sampled from 20348 (20358) to 20348 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.239), width: 16
Scan time: 8.430
The best scores are: opt bits E(85289)
NP_004444 (OMIM: 231675,231680) electron transfer ( 617) 4285 954.1 0
NP_001268666 (OMIM: 231675,231680) electron transf ( 570) 3885 865.9 0
NP_001268667 (OMIM: 231675,231680) electron transf ( 556) 3865 861.5 0
>>NP_004444 (OMIM: 231675,231680) electron transfer flav (617 aa)
initn: 4285 init1: 4285 opt: 4285 Z-score: 5101.8 bits: 954.1 E(85289): 0
Smith-Waterman score: 4285; 99.8% identity (99.8% similar) in 617 aa overlap (1-617:1-617)
10 20 30 40 50 60
pF1KE2 MLVPLAKLSCLAYQCFHALKIKKNYLPLCAIRWSSTSTVPRITTHYTIYPRDKDKRWEGV
:::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
NP_004 MLVPLAKLSCLAYQCFHALKIKKNYLPLCATRWSSTSTVPRITTHYTIYPRDKDKRWEGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 VTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 RHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 ENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 MEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 DDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQN
550 560 570 580 590 600
610
pF1KE2 INWVVPEGGGGPAYNGM
:::::::::::::::::
NP_004 INWVVPEGGGGPAYNGM
610
>>NP_001268666 (OMIM: 231675,231680) electron transfer f (570 aa)
initn: 3942 init1: 3885 opt: 3885 Z-score: 4625.8 bits: 865.9 E(85289): 0
Smith-Waterman score: 3885; 100.0% identity (100.0% similar) in 559 aa overlap (59-617:12-570)
30 40 50 60 70 80
pF1KE2 CAIRWSSTSTVPRITTHYTIYPRDKDKRWEGVNMERFAEEADVVIVGAGPAGLSAAVRLK
::::::::::::::::::::::::::::::
NP_001 MLVPLAKLSCLGVNMERFAEEADVVIVGAGPAGLSAAVRLK
10 20 30 40
90 100 110 120 130 140
pF1KE2 QLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFG
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE2 ILTEKYRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILTEKYRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDD
110 120 130 140 150 160
210 220 230 240 250 260
pF1KE2 GSVKGIATNDVGIQKDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSVKGIATNDVGIQKDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEP
170 180 190 200 210 220
270 280 290 300 310 320
pF1KE2 QTYGIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTYGIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLD
230 240 250 260 270 280
330 340 350 360 370 380
pF1KE2 YQNPYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQNPYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCS
290 300 310 320 330 340
390 400 410 420 430 440
pF1KE2 PGFMNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGFMNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKEL
350 360 370 380 390 400
450 460 470 480 490 500
pF1KE2 YSVRNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSVRNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYP
410 420 430 440 450 460
510 520 530 540 550 560
pF1KE2 KPDGQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPDGQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEF
470 480 490 500 510 520
570 580 590 600 610
pF1KE2 VPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM
530 540 550 560 570
>>NP_001268667 (OMIM: 231675,231680) electron transfer f (556 aa)
initn: 3865 init1: 3865 opt: 3865 Z-score: 4602.1 bits: 861.5 E(85289): 0
Smith-Waterman score: 3865; 100.0% identity (100.0% similar) in 556 aa overlap (62-617:1-556)
40 50 60 70 80 90
pF1KE2 RWSSTSTVPRITTHYTIYPRDKDKRWEGVNMERFAEEADVVIVGAGPAGLSAAVRLKQLA
::::::::::::::::::::::::::::::
NP_001 MERFAEEADVVIVGAGPAGLSAAVRLKQLA
10 20 30
100 110 120 130 140 150
pF1KE2 VAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILT
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE2 EKYRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKYRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSV
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE2 KGIATNDVGIQKDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGIATNDVGIQKDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTY
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE2 GIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLDYQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLDYQN
220 230 240 250 260 270
340 350 360 370 380 390
pF1KE2 PYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGF
280 290 300 310 320 330
400 410 420 430 440 450
pF1KE2 MNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSV
340 350 360 370 380 390
460 470 480 490 500 510
pF1KE2 RNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYPKPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYPKPD
400 410 420 430 440 450
520 530 540 550 560 570
pF1KE2 GQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPV
460 470 480 490 500 510
580 590 600 610
pF1KE2 EQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM
520 530 540 550
617 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 19:49:31 2016 done: Mon Nov 7 19:49:32 2016
Total Scan time: 8.430 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]