FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2426, 617 aa
  1>>>pF1KE2426 617 - 617 aa - 617 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6670+/-0.000933; mu= 17.0083+/- 0.056
 mean_var=67.1291+/-13.514, 0's: 0 Z-trim(105.1): 30  B-trim: 0 in 0/49
 Lambda= 0.156538
 statistics sampled from 8216 (8222) to 8216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS3800.1 ETFDH gene_id:2110|Hs108|chr4           ( 617) 4285 977.0       0
CCDS64090.1 ETFDH gene_id:2110|Hs108|chr4          ( 570) 3885 886.7       0


>>CCDS3800.1 ETFDH gene_id:2110|Hs108|chr4                (617 aa)
 initn: 4285 init1: 4285 opt: 4285  Z-score: 5225.5  bits: 977.0 E(32554):    0
Smith-Waterman score: 4285; 99.8% identity (99.8% similar) in 617 aa overlap (1-617:1-617)

               10        20        30        40        50        60
pF1KE2 MLVPLAKLSCLAYQCFHALKIKKNYLPLCAIRWSSTSTVPRITTHYTIYPRDKDKRWEGV
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS38 MLVPLAKLSCLAYQCFHALKIKKNYLPLCATRWSSTSTVPRITTHYTIYPRDKDKRWEGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 NMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 PGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 SWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 VTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 VTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 RHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 RHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 ENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 MEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 DDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQN
              550       560       570       580       590       600

              610       
pF1KE2 INWVVPEGGGGPAYNGM
       :::::::::::::::::
CCDS38 INWVVPEGGGGPAYNGM
              610       

>>CCDS64090.1 ETFDH gene_id:2110|Hs108|chr4               (570 aa)
 initn: 3942 init1: 3885 opt: 3885  Z-score: 4737.8  bits: 886.7 E(32554):    0
Smith-Waterman score: 3885; 100.0% identity (100.0% similar) in 559 aa overlap (59-617:12-570)

       30        40        50        60        70        80        
pF1KE2 CAIRWSSTSTVPRITTHYTIYPRDKDKRWEGVNMERFAEEADVVIVGAGPAGLSAAVRLK
                                     ::::::::::::::::::::::::::::::
CCDS64                    MLVPLAKLSCLGVNMERFAEEADVVIVGAGPAGLSAAVRLK
                                  10        20        30        40 

       90       100       110       120       130       140        
pF1KE2 QLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 QLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFG
              50        60        70        80        90       100 

      150       160       170       180       190       200        
pF1KE2 ILTEKYRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ILTEKYRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDD
             110       120       130       140       150       160 

      210       220       230       240       250       260        
pF1KE2 GSVKGIATNDVGIQKDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GSVKGIATNDVGIQKDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEP
             170       180       190       200       210       220 

      270       280       290       300       310       320        
pF1KE2 QTYGIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 QTYGIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLD
             230       240       250       260       270       280 

      330       340       350       360       370       380        
pF1KE2 YQNPYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YQNPYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCS
             290       300       310       320       330       340 

      390       400       410       420       430       440        
pF1KE2 PGFMNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PGFMNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKEL
             350       360       370       380       390       400 

      450       460       470       480       490       500        
pF1KE2 YSVRNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YSVRNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYP
             410       420       430       440       450       460 

      510       520       530       540       550       560        
pF1KE2 KPDGQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KPDGQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEF
             470       480       490       500       510       520 

      570       580       590       600       610       
pF1KE2 VPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM
             530       540       550       560       570




617 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:49:30 2016 done: Mon Nov  7 19:49:31 2016
 Total Scan time:  2.960 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]