FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2374, 284 aa
  1>>>pF1KE2374 284 - 284 aa - 284 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3410+/-0.000734; mu= 14.7295+/- 0.044
 mean_var=58.9662+/-11.700, 0's: 0 Z-trim(108.4): 8  B-trim: 0 in 0/53
 Lambda= 0.167022
 statistics sampled from 10190 (10195) to 10190 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.313), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS13860.1 NIPSNAP1 gene_id:8508|Hs108|chr22      ( 284) 1970 482.7 1.3e-136
CCDS5521.1 GBAS gene_id:2631|Hs108|chr7            ( 286) 1383 341.2   5e-94
CCDS56488.1 GBAS gene_id:2631|Hs108|chr7           ( 247)  791 198.6 3.8e-51
CCDS6761.1 NIPSNAP3B gene_id:55335|Hs108|chr9      ( 247)  257 69.9 2.1e-12


>>CCDS13860.1 NIPSNAP1 gene_id:8508|Hs108|chr22           (284 aa)
 initn: 1970 init1: 1970 opt: 1970  Z-score: 2566.0  bits: 482.7 E(32554): 1.3e-136
Smith-Waterman score: 1970; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)

               10        20        30        40        50        60
pF1KE2 MAPRLCSISVTARRLLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAPRLCSISVTARRLLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 TLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 QAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDL
              190       200       210       220       230       240

              250       260       270       280    
pF1KE2 QSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ
              250       260       270       280    

>>CCDS5521.1 GBAS gene_id:2631|Hs108|chr7                 (286 aa)
 initn: 1383 init1: 1383 opt: 1383  Z-score: 1801.6  bits: 341.2 E(32554): 5e-94
Smith-Waterman score: 1383; 75.5% identity (93.2% similar) in 249 aa overlap (36-284:38-286)

          10        20        30        40        50        60     
pF1KE2 CSISVTARRLLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHSTLLSK
                                     ... : ::..::::.::::::::::.::.:
CCDS55 ARGAAWAGGLLQRAAPCSLLPRLRTWTSSSNRSREDSWLKSLFVRKVDPRKDAHSNLLAK
        10        20        30        40        50        60       

          70        80        90       100       110       120     
pF1KE2 KETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAVHL
       ::::::::.:::::::: :.:::.. . ::::.: :. :::.:::.::::::::::::::
CCDS55 KETSNLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQDQAVHL
        70        80        90       100       110       120       

         130       140       150       160       170       180     
pF1KE2 WRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPNIY
       ::. :::::: . ::::..:::.::::. ::.:::::.::::::::::::: :: :::::
CCDS55 WRYEGGYPALTEVMNKLRENKEFLEFRKARSDMLLSRKNQLLLEFSFWNEPVPRSGPNIY
       130       140       150       160       170       180       

         190       200       210       220       230       240     
pF1KE2 ELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREE
       :::.:.:.::::::::: :::::..::...:::::::::::.::.:::::::.:::.::.
CCDS55 ELRSYQLRPGTMIEWGNYWARAIRFRQDGNEAVGGFFSQIGQLYMVHHLWAYRDLQTRED
       190       200       210       220       230       240       

         250       260       270       280    
pF1KE2 TRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ
        :::::.:.::.: :::::::...:::::::::: ::::
CCDS55 IRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ
       250       260       270       280      

>>CCDS56488.1 GBAS gene_id:2631|Hs108|chr7                (247 aa)
 initn: 984 init1: 791 opt: 791  Z-score: 1031.6  bits: 198.6 E(32554): 3.8e-51
Smith-Waterman score: 923; 58.6% identity (75.1% similar) in 249 aa overlap (36-284:38-247)

          10        20        30        40        50        60     
pF1KE2 CSISVTARRLLGGPGPRAGDVASAAAARFYSKDNEGSWFRSLFVHKVDPRKDAHSTLLSK
                                     ... : ::..::::.::::::::::.::.:
CCDS56 ARGAAWAGGLLQRAAPCSLLPRLRTWTSSSNRSREDSWLKSLFVRKVDPRKDAHSNLLAK
        10        20        30        40        50        60       

          70        80        90       100       110       120     
pF1KE2 KETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAVHL
       ::::::::.::.    ..    ..:   ::                   :.:   ..   
CCDS56 KETSNLYKLQFKRCCQRFTKINTTL---VL-------------------WWGLGTRG---
        70        80        90                             100     

         130       140       150       160       170       180     
pF1KE2 WRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPNIY
                 :   .::    :.::::. ::.:::::.::::::::::::: :: :::::
CCDS56 ----------MASRTKL----EFLEFRKARSDMLLSRKNQLLLEFSFWNEPVPRSGPNIY
                          110       120       130       140        

         190       200       210       220       230       240     
pF1KE2 ELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREE
       :::.:.:.::::::::: :::::..::...:::::::::::.::.:::::::.:::.::.
CCDS56 ELRSYQLRPGTMIEWGNYWARAIRFRQDGNEAVGGFFSQIGQLYMVHHLWAYRDLQTRED
      150       160       170       180       190       200        

         250       260       270       280    
pF1KE2 TRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ
        :::::.:.::.: :::::::...:::::::::: ::::
CCDS56 IRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPLQ
      210       220       230       240       

>>CCDS6761.1 NIPSNAP3B gene_id:55335|Hs108|chr9           (247 aa)
 initn: 196 init1:  99 opt: 257  Z-score: 336.2  bits: 69.9 E(32554): 2.1e-12
Smith-Waterman score: 257; 25.8% identity (58.1% similar) in 229 aa overlap (65-284:30-247)

           40        50        60        70        80        90    
pF1KE2 YSKDNEGSWFRSLFVHKVDPRKDAHSTLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAV
                                     ..  ...:... . .::  ..:.    : .
CCDS67  MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYLKPSNMNAF---MENL
                10        20        30        40        50         

          100       110        120       130       140       150   
pF1KE2 LPKLHLDEDYPCSLVGNWNTWYG-EQDQAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRR
         ..::  .:   ::: :.. .: . ... :.:.... .    .  . : : ::.    .
CCDS67 KKNIHLRTSYS-ELVGFWSVEFGGRTNKVFHIWKYDN-FAHRAEVRKALANCKEW----Q
         60         70        80        90        100           110

            160       170            180       190       200       
pF1KE2 ERSQML-LSRRNQLLLEFSF---WN--EPQPRMGPNIYELRTYKLKPGTMIEWGNNWARA
       :.: .  :.: ..   :...   :.  :  :. :  .::: ....:::    ::. . ::
CCDS67 EQSIIPNLARIDKQETEITYLIPWSKLEKPPKEG--VYELAVFQMKPGGPALWGDAFERA
              120       130       140         150       160        

       210         220       230       240       250       260     
pF1KE2 IKYRQE--NQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP
       :. . .    ..:: : .. :::  :: ::  .. .::   :. . .       :  .: 
CCDS67 INAHVNLGYTKVVGVFHTEYGELNRVHVLWWNESADSRAAGRHKSHEDPRVVAAVRESVN
      170       180       190       200       210       220        

         270       280    
pF1KE2 LVRHMESRIMIPLKISPLQ
        .  ... ..:: ..:::.
CCDS67 YLVSQQNMLLIPASFSPLK
      230       240       




284 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:56:17 2016 done: Sun Nov  6 12:56:17 2016
 Total Scan time:  2.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]