FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2271, 458 aa
  1>>>pF1KE2271 458 - 458 aa - 458 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8701+/-0.000795; mu= 15.5060+/- 0.048
 mean_var=84.4806+/-16.871, 0's: 0 Z-trim(108.5): 26  B-trim: 4 in 1/52
 Lambda= 0.139539
 statistics sampled from 10230 (10248) to 10230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.315), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS8562.1 CD4 gene_id:920|Hs108|chr12             ( 458) 3024 618.6 4.2e-177


>>CCDS8562.1 CD4 gene_id:920|Hs108|chr12                  (458 aa)
 initn: 3024 init1: 3024 opt: 3024  Z-score: 3293.1  bits: 618.6 E(32554): 4.2e-177
Smith-Waterman score: 3024; 100.0% identity (100.0% similar) in 458 aa overlap (1-458:1-458)

               10        20        30        40        50        60
pF1KE2 MNRGVPFRHLLLVLQLALLPAATQGKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MNRGVPFRHLLLVLQLALLPAATQGKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 LVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 TWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LNPEAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LNPEAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCV
              370       380       390       400       410       420

              430       440       450        
pF1KE2 RCRHRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
       ::::::::::::::::::::::::::::::::::::::
CCDS85 RCRHRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
              430       440       450        




458 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:32:24 2016 done: Mon Nov  7 00:32:25 2016
 Total Scan time:  2.650 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]