FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2049, 671 aa
  1>>>pF1KE2049     671 - 671 aa - 671 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4421+/-0.00153; mu= -10.5952+/- 0.088
 mean_var=427.4121+/-98.281, 0's: 0 Z-trim(108.1): 405  B-trim: 163 in 1/51
 Lambda= 0.062037
 statistics sampled from 9526 (10009) to 9526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.307), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS4482.1 RIPK1 gene_id:8737|Hs108|chr6           ( 671) 4511 419.3 8.6e-117


>>CCDS4482.1 RIPK1 gene_id:8737|Hs108|chr6                (671 aa)
 initn: 4511 init1: 4511 opt: 4511  Z-score: 2210.3  bits: 419.3 E(32554): 8.6e-117
Smith-Waterman score: 4511; 100.0% identity (100.0% similar) in 671 aa overlap (1-671:1-671)

               10        20        30        40        50        60
pF1KE2 MQPDMSLNVIKMKSSDFLESAELDSGGFGKVSLCFHRTQGLMIMKTVYKGPNCIEHNEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MQPDMSLNVIKMKSSDFLESAELDSGGFGKVSLCFHRTQGLMIMKTVYKGPNCIEHNEAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVMEYMEKGNLMHVLKAEMSTPLSVKGRIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVMEYMEKGNLMHVLKAEMSTPLSVKGRIIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 EIIEGMCYLHGKGVIHKDLKPENILVDNDFHIKIADLGLASFKMWSKLNNEEHNELREVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EIIEGMCYLHGKGVIHKDLKPENILVDNDFHIKIADLGLASFKMWSKLNNEEHNELREVD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GTAKKNGGTLYYMAPEHLNDVNAKPTEKSDVYSFAVVLWAIFANKEPYENAICEQQLIMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GTAKKNGGTLYYMAPEHLNDVNAKPTEKSDVYSFAVVLWAIFANKEPYENAICEQQLIMC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 IKSGNRPDVDDITEYCPREIISLMKLCWEANPEARPTFPGIEEKFRPFYLSQLEESVEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IKSGNRPDVDDITEYCPREIISLMKLCWEANPEARPTFPGIEEKFRPFYLSQLEESVEED
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 VKSLKKEYSNENAVVKRMQSLQLDCVAVPSSRSNSATEQPGSLHSSQGLGMGPVEESWFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VKSLKKEYSNENAVVKRMQSLQLDCVAVPSSRSNSATEQPGSLHSSQGLGMGPVEESWFA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 PSLEHPQEENEPSLQSKLQDEANYHLYGSRMDRQTKQQPRQNVAYNREEERRRRVSHDPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PSLEHPQEENEPSLQSKLQDEANYHLYGSRMDRQTKQQPRQNVAYNREEERRRRVSHDPF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 AQQRPYENFQNTEGKGTAYSSAASHGNAVHQPSGLTSQPQVLYQNNGLYSSHGFGTRPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AQQRPYENFQNTEGKGTAYSSAASHGNAVHQPSGLTSQPQVLYQNNGLYSSHGFGTRPLD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 PGTAGPRVWYRPIPSHMPSLHNIPVPETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PGTAGPRVWYRPIPSHMPSLHNIPVPETNYLGNTPTMPFSSLPPTDESIKYTIYNSTGIQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 IGAYNYMEIGGTSSSLLDSTNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IGAYNYMEIGGTSSSLLDSTNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 CARKLGFTQSQIDEIDHDYERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CARKLGFTQSQIDEIDHDYERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRID
              610       620       630       640       650       660

              670 
pF1KE2 LLSSLIYVSQN
       :::::::::::
CCDS44 LLSSLIYVSQN
              670 




671 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Jun  3 14:39:56 2018 done: Sun Jun  3 14:39:56 2018
 Total Scan time:  1.670 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]