FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1962, 527 aa
  1>>>pF1KE1962 527 - 527 aa - 527 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7599+/-0.000418; mu= 16.0130+/- 0.026
 mean_var=69.4187+/-14.117, 0's: 0 Z-trim(111.7): 31  B-trim: 489 in 1/48
 Lambda= 0.153935
 statistics sampled from 20330 (20351) to 20330 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.239), width:  16
 Scan time:  9.010

The best scores are:                                      opt bits E(85289)
NP_001743 (OMIM: 115500,614097) catalase [Homo sap ( 527) 3642 818.2       0


>>NP_001743 (OMIM: 115500,614097) catalase [Homo sapiens  (527 aa)
 initn: 3642 init1: 3642 opt: 3642  Z-score: 4369.8  bits: 818.2 E(85289):    0
Smith-Waterman score: 3642; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)

               10        20        30        40        50        60
pF1KE1 MADSRDPASDQMQHWKEQRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADSRDPASDQMQHWKEQRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 KVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 THRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 HSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQIFIQKKAVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQIFIQKKAVK
              430       440       450       460       470       480

              490       500       510       520       
pF1KE1 NFTEVHPDYGSHIQALLDKYNAEKPKNAIHTFVQSGSHLAAREKANL
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFTEVHPDYGSHIQALLDKYNAEKPKNAIHTFVQSGSHLAAREKANL
              490       500       510       520       




527 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 20:10:14 2016 done: Sun Nov  6 20:10:16 2016
 Total Scan time:  9.010 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]