FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1823, 336 aa
  1>>>pF1KE1823     336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0032+/-0.00102; mu= 13.0332+/- 0.061
 mean_var=91.4866+/-18.177, 0's: 0 Z-trim(104.5): 75  B-trim: 0 in 0/52
 Lambda= 0.134090
 statistics sampled from 7961 (8016) to 7961 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.24), width:  16
 Scan time:  1.090

The best scores are:                                      opt bits E(33420)
CCDS11997.1 CD226 gene_id:10666|Hs109|chr18        ( 336) 2254 446.4 1.5e-125
CCDS77197.1 CD226 gene_id:10666|Hs109|chr18        ( 181) 1206 243.5   1e-64


>>CCDS11997.1 CD226 gene_id:10666|Hs109|chr18             (336 aa)
 initn: 2254 init1: 2254 opt: 2254  Z-score: 2367.5  bits: 446.4 E(33420): 1.5e-125
Smith-Waterman score: 2254; 99.7% identity (100.0% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KE1 MDYPTLLLALLHVYRALCEEVLWHTSVPFAENMSLECVYPSMGILTQVEWFKIGTQQDSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDYPTLLLALLHVYRALCEEVLWHTSVPFAENMSLECVYPSMGILTQVEWFKIGTQQDSI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AIFSPTHGMVIRKPYAERVYFLNSTMASNNMTLFFRNASEDDVGYYSCSLYTYPQGTWQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AIFSPTHGMVIRKPYAERVYFLNSTMASNNMTLFFRNASEDDVGYYSCSLYTYPQGTWQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VIQVVQSDSFEAAVPSNSHIVSEPGKNVTLTCQPQMTWPVQAVRWEKIQPRQIDLLTYCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VIQVVQSDSFEAAVPSNSHIVSEPGKNVTLTCQPQMTWPVQAVRWEKIQPRQIDLLTYCN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LVHGRNFTSKFPRQIVSNCSHGRWSVIVIPDVTVSDSGLYRCYLQASAGENETFVMRLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LVHGRNFTSKFPRQIVSNCSHGRWSVIVIPDVTVSDSGLYRCYLQASAGENETFVMRLTV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 AEGKTDNQYTLFVAGGTVLLLLFVISITTIIVIFLNRRRRRERRDLFTESWDTQKAPNNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AEGKTDNQYTLFVAGGTVLLLLFVISITTIIVIFLNRRRRRERRDLFTESWDTQKAPNNY
              250       260       270       280       290       300

              310       320       330      
pF1KE1 RSPISTGQPTNQSMDDTREDIYVNYPTFSRRPKTRV
       ::::::.:::::::::::::::::::::::::::::
CCDS11 RSPISTSQPTNQSMDDTREDIYVNYPTFSRRPKTRV
              310       320       330      

>>CCDS77197.1 CD226 gene_id:10666|Hs109|chr18             (181 aa)
 initn: 1206 init1: 1206 opt: 1206  Z-score: 1275.7  bits: 243.5 E(33420): 1e-64
Smith-Waterman score: 1206; 99.4% identity (100.0% similar) in 181 aa overlap (156-336:1-181)

         130       140       150       160       170       180     
pF1KE1 QSDSFEAAVPSNSHIVSEPGKNVTLTCQPQMTWPVQAVRWEKIQPRQIDLLTYCNLVHGR
                                     ::::::::::::::::::::::::::::::
CCDS77                               MTWPVQAVRWEKIQPRQIDLLTYCNLVHGR
                                             10        20        30

         190       200       210       220       230       240     
pF1KE1 NFTSKFPRQIVSNCSHGRWSVIVIPDVTVSDSGLYRCYLQASAGENETFVMRLTVAEGKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NFTSKFPRQIVSNCSHGRWSVIVIPDVTVSDSGLYRCYLQASAGENETFVMRLTVAEGKT
               40        50        60        70        80        90

         250       260       270       280       290       300     
pF1KE1 DNQYTLFVAGGTVLLLLFVISITTIIVIFLNRRRRRERRDLFTESWDTQKAPNNYRSPIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DNQYTLFVAGGTVLLLLFVISITTIIVIFLNRRRRRERRDLFTESWDTQKAPNNYRSPIS
              100       110       120       130       140       150

         310       320       330      
pF1KE1 TGQPTNQSMDDTREDIYVNYPTFSRRPKTRV
       :.:::::::::::::::::::::::::::::
CCDS77 TSQPTNQSMDDTREDIYVNYPTFSRRPKTRV
              160       170       180 




336 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jul 16 16:06:16 2019 done: Tue Jul 16 16:06:16 2019
 Total Scan time:  1.090 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]