FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1779, 288 aa
  1>>>pF1KE1779     288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4909+/-0.000932; mu= 14.6479+/- 0.056
 mean_var=104.7927+/-21.265, 0's: 0 Z-trim(106.9): 88  B-trim: 0 in 0/54
 Lambda= 0.125288
 statistics sampled from 9296 (9384) to 9296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.281), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(33420)
CCDS2989.1 CD80 gene_id:941|Hs109|chr3             ( 288) 1950 363.2 1.3e-100


>>CCDS2989.1 CD80 gene_id:941|Hs109|chr3                  (288 aa)
 initn: 1950 init1: 1950 opt: 1950  Z-score: 1920.1  bits: 363.2 E(33420): 1.3e-100
Smith-Waterman score: 1950; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE1 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSCGHNVSVEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGVIHVTKEVKEVATLSCGHNVSVEELA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 YEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNTTKQEHFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWNTTKQEHFP
              190       200       210       220       230       240

              250       260       270       280        
pF1KE1 DNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNERLRRESVRPV
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DNLLPSWAITLISVNGIFVICCLTYCFAPRCRERRRNERLRRESVRPV
              250       260       270       280        




288 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:39:13 2019 done: Thu Oct 24 21:39:14 2019
 Total Scan time:  1.170 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]