FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1742, 244 aa
  1>>>pF1KE1742     244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8464+/-0.000768; mu= 16.7915+/- 0.046
 mean_var=59.1438+/-11.557, 0's: 0 Z-trim(107.1): 21  B-trim: 0 in 0/50
 Lambda= 0.166771
 statistics sampled from 9455 (9473) to 9455 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.283), width:  16
 Scan time:  0.990

The best scores are:                                      opt bits E(33420)
CCDS8804.1 METTL7A gene_id:25840|Hs109|chr12       ( 244) 1698 416.6 7.8e-117
CCDS8887.2 METTL7B gene_id:196410|Hs109|chr12      ( 244) 1057 262.4 2.1e-70


>>CCDS8804.1 METTL7A gene_id:25840|Hs109|chr12            (244 aa)
 initn: 1698 init1: 1698 opt: 1698  Z-score: 2211.3  bits: 416.6 E(33420): 7.8e-117
Smith-Waterman score: 1698; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE1 MELTIFILRLAIYILTFPLYLLNFLGLWSWICKKWFPYFLVRFTVIYNEQMASKKRELFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MELTIFILRLAIYILTFPLYLLNFLGLWSWICKKWFPYFLVRFTVIYNEQMASKKRELFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NLQEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLIKSIAENRHLQFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 NLQEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLIKSIAENRHLQFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 RFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAEC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 STWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQHIQAPLSWELVRPHIYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 STWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQHIQAPLSWELVRPHIYG
              190       200       210       220       230       240

           
pF1KE1 YAVK
       ::::
CCDS88 YAVK
           

>>CCDS8887.2 METTL7B gene_id:196410|Hs109|chr12           (244 aa)
 initn: 1057 init1: 1057 opt: 1057  Z-score: 1377.8  bits: 262.4 E(33420): 2.1e-70
Smith-Waterman score: 1057; 58.6% identity (85.7% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE1 MELTIFILRLAIYILTFPLYLLNFLGLWSWICKKWFPYFLVRFTVIYNEQMASKKRELFS
       :.. . .:.: . .::.::.:. .:: :. .::..:::... .:   :..: ::::::::
CCDS88 MDILVPLLQLLVLLLTLPLHLMALLGCWQPLCKSYFPYLMAVLTPKSNRKMESKKRELFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NLQEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEKFLIKSIAENRHLQFE
       ... ..: :::..:::.::::::::.::::::::::.::::.::::: ::.:::::::.:
CCDS88 QIKGLTGASGKVALLELGCGTGANFQFYPPGCRVTCLDPNPHFEKFLTKSMAENRHLQYE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAEC
       ::::: ::.:.:.::::.::::::::::::.. ...:.:: :::::::...: ::::   
CCDS88 RFVVAPGEDMRQLADGSMDVVVCTLVLCSVQSPRKVLQEVRRVLRPGGVLFFWEHVAEPY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 STWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSKLKLQHIQAPLSWELVRPHIYG
       ..: ..::::..:.:. . ::: ::::.:: :: :.::......   ::.:  : :::.:
CCDS88 GSWAFMWQQVFEPTWKHIGDGCCLTRETWKDLENAQFSEIQMERQPPPLKWLPVGPHIMG
              190       200       210       220       230       240

           
pF1KE1 YAVK
        :::
CCDS88 KAVK
           




244 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Aug 16 14:32:34 2021 done: Mon Aug 16 14:32:35 2021
 Total Scan time:  0.990 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]