FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1099, 320 aa
  1>>>pF1KE1099 320 - 320 aa - 320 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6725+/-0.000338; mu= 13.7788+/- 0.021
 mean_var=67.6381+/-12.965, 0's: 0 Z-trim(115.2): 22  B-trim: 0 in 0/53
 Lambda= 0.155948
 statistics sampled from 25547 (25568) to 25547 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.3), width:  16
 Scan time:  6.770

The best scores are:                                      opt bits E(85289)
NP_060909 (OMIM: 615319) protein IMPACT [Homo sapi ( 320) 2163 495.4 6.5e-140
XP_016881321 (OMIM: 615319) PREDICTED: protein IMP ( 302) 2043 468.4 8.3e-132


>>NP_060909 (OMIM: 615319) protein IMPACT [Homo sapiens]  (320 aa)
 initn: 2163 init1: 2163 opt: 2163  Z-score: 2632.9  bits: 495.4 E(85289): 6.5e-140
Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 320 aa overlap (1-320:1-320)

               10        20        30        40        50        60
pF1KE1 MAEGDAGSDQRQNEEIEAMAAIYGEEWCVIDDCAKIFCIRISDDIDDPKWTLCLQVMLPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAEGDAGSDQRQNEEIEAMAAIYGEEWCVIDDCAKIFCIRISDDIDDPKWTLCLQVMLPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EYPGTAPPIYQLNAPWLKGQERADLSNSLEEIYIQNIGESILYLWVEKIRDVLIQKSQMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EYPGTAPPIYQLNAPWLKGQERADLSNSLEEIYIQNIGESILYLWVEKIRDVLIQKSQMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EPGPDVKKKTEEEDVECEDDLILACQPESSVKALDFDISETRTEVEVEELPPIDHGIPIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EPGPDVKKKTEEEDVECEDDLILACQPESSVKALDFDISETRTEVEVEELPPIDHGIPIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DRRSTFQAHLAPVVCPKQVKMVLSKLYENKKIASATHNIYAYRIYCEDKQTFLQDCEDDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DRRSTFQAHLAPVVCPKQVKMVLSKLYENKKIASATHNIYAYRIYCEDKQTFLQDCEDDG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHINNCARNILVEKNYTNSPEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHINNCARNILVEKNYTNSPEE
              250       260       270       280       290       300

              310       320
pF1KE1 SSKALGKNKKVRKDKKRNEH
       ::::::::::::::::::::
NP_060 SSKALGKNKKVRKDKKRNEH
              310       320

>>XP_016881321 (OMIM: 615319) PREDICTED: protein IMPACT   (302 aa)
 initn: 2043 init1: 2043 opt: 2043  Z-score: 2487.4  bits: 468.4 E(85289): 8.3e-132
Smith-Waterman score: 2043; 99.7% identity (100.0% similar) in 302 aa overlap (19-320:1-302)

               10        20        30        40        50        60
pF1KE1 MAEGDAGSDQRQNEEIEAMAAIYGEEWCVIDDCAKIFCIRISDDIDDPKWTLCLQVMLPN
                         ::::::::::::::::::::::::::::::::::::::::::
XP_016                   MAAIYGEEWCVIDDCAKIFCIRISDDIDDPKWTLCLQVMLPN
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KE1 EYPGTAPPIYQLNAPWLKGQERADLSNSLEEIYIQNIGESILYLWVEKIRDVLIQKSQMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EYPGTAPPIYQLNAPWLKGQERADLSNSLEEIYIQNIGESILYLWVEKIRDVLIQKSQMT
             50        60        70        80        90       100  

              130       140       150       160       170       180
pF1KE1 EPGPDVKKKTEEEDVECEDDLILACQPESSVKALDFDISETRTEVEVEELPPIDHGIPIT
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
XP_016 EPGPDVKKKTEEEDVECEDDLILACQPESSLKALDFDISETRTEVEVEELPPIDHGIPIT
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KE1 DRRSTFQAHLAPVVCPKQVKMVLSKLYENKKIASATHNIYAYRIYCEDKQTFLQDCEDDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DRRSTFQAHLAPVVCPKQVKMVLSKLYENKKIASATHNIYAYRIYCEDKQTFLQDCEDDG
            170       180       190       200       210       220  

              250       260       270       280       290       300
pF1KE1 ETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHINNCARNILVEKNYTNSPEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHINNCARNILVEKNYTNSPEE
            230       240       250       260       270       280  

              310       320
pF1KE1 SSKALGKNKKVRKDKKRNEH
       ::::::::::::::::::::
XP_016 SSKALGKNKKVRKDKKRNEH
            290       300  




320 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:12:53 2016 done: Sat Nov  5 19:12:54 2016
 Total Scan time:  6.770 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]