FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1099, 320 aa
  1>>>pF1KE1099 320 - 320 aa - 320 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2767+/-0.000755; mu= 15.9368+/- 0.046
 mean_var=65.8562+/-12.765, 0's: 0 Z-trim(108.3): 18  B-trim: 87 in 1/51
 Lambda= 0.158043
 statistics sampled from 10103 (10114) to 10103 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.311), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS11886.1 IMPACT gene_id:55364|Hs108|chr18       ( 320) 2159 500.9 5.6e-142


>>CCDS11886.1 IMPACT gene_id:55364|Hs108|chr18            (320 aa)
 initn: 2159 init1: 2159 opt: 2159  Z-score: 2662.4  bits: 500.9 E(32554): 5.6e-142
Smith-Waterman score: 2159; 99.7% identity (100.0% similar) in 320 aa overlap (1-320:1-320)

               10        20        30        40        50        60
pF1KE1 MAEGDAGSDQRQNEEIEAMAAIYGEEWCVIDDCAKIFCIRISDDIDDPKWTLCLQVMLPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEGDAGSDQRQNEEIEAMAAIYGEEWCVIDDCAKIFCIRISDDIDDPKWTLCLQVMLPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EYPGTAPPIYQLNAPWLKGQERADLSNSLEEIYIQNIGESILYLWVEKIRDVLIQKSQMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EYPGTAPPIYQLNAPWLKGQERADLSNSLEEIYIQNIGESILYLWVEKIRDVLIQKSQMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EPGPDVKKKTEEEDVECEDDLILACQPESSVKALDFDISETRTEVEVEELPPIDHGIPIT
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS11 EPGPDVKKKTEEEDVECEDDLILACQPESSLKALDFDISETRTEVEVEELPPIDHGIPIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DRRSTFQAHLAPVVCPKQVKMVLSKLYENKKIASATHNIYAYRIYCEDKQTFLQDCEDDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DRRSTFQAHLAPVVCPKQVKMVLSKLYENKKIASATHNIYAYRIYCEDKQTFLQDCEDDG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 ETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHINNCARNILVEKNYTNSPEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHINNCARNILVEKNYTNSPEE
              250       260       270       280       290       300

              310       320
pF1KE1 SSKALGKNKKVRKDKKRNEH
       ::::::::::::::::::::
CCDS11 SSKALGKNKKVRKDKKRNEH
              310       320




320 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:12:52 2016 done: Sat Nov  5 19:12:53 2016
 Total Scan time:  2.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]