FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1039, 495 aa
  1>>>pF1KE1039 495 - 495 aa - 495 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8208+/-0.000987; mu= 7.8473+/- 0.059
 mean_var=170.7599+/-34.872, 0's: 0 Z-trim(110.4): 47  B-trim: 459 in 1/51
 Lambda= 0.098148
 statistics sampled from 11579 (11616) to 11579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.357), width:  16
 Scan time:  3.570

The best scores are:                                      opt bits E(32554)
CCDS2571.1 RAD18 gene_id:56852|Hs108|chr3          ( 495) 3227 469.2 4.6e-132


>>CCDS2571.1 RAD18 gene_id:56852|Hs108|chr3               (495 aa)
 initn: 3227 init1: 3227 opt: 3227  Z-score: 2484.4  bits: 469.2 E(32554): 4.6e-132
Smith-Waterman score: 3227; 99.8% identity (100.0% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KE1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 PTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 ASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VQEIENIEKTRMRLEASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQARKG
       :.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 VREIENIEKTRMRLEASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQARKG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 YKKIAGMSQKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLDSPEELEPDREED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 YKKIAGMSQKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLDSPEELEPDREED
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 SSSCIDIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEASHKNDLQDTEISPRQNRRTRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 SSSCIDIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEASHKNDLQDTEISPRQNRRTRA
              430       440       450       460       470       480

              490     
pF1KE1 AESAEIEPRNKRNRN
       :::::::::::::::
CCDS25 AESAEIEPRNKRNRN
              490     




495 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:42:34 2016 done: Sat Nov  5 07:42:34 2016
 Total Scan time:  3.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]