FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0791, 357 aa
  1>>>pF1KE0791 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9922+/-0.00115; mu= 12.9525+/- 0.069
 mean_var=74.9144+/-15.196, 0's: 0 Z-trim(102.1): 32  B-trim: 0 in 0/50
 Lambda= 0.148181
 statistics sampled from 6804 (6806) to 6804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.573), E-opt: 0.2 (0.209), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS2191.1 RBM43 gene_id:375287|Hs108|chr2         ( 357) 2262 493.3 1.3e-139


>>CCDS2191.1 RBM43 gene_id:375287|Hs108|chr2              (357 aa)
 initn: 2262 init1: 2262 opt: 2262  Z-score: 2620.0  bits: 493.3 E(32554): 1.3e-139
Smith-Waterman score: 2262; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KE0 MASVLNVKESKAPERTVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVIYPTRTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MASVLNVKESKAPERTVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVIYPTRTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLRVSHFGDKIFSSVNAILDLSVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 GVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLRVSHFGDKIFSSVNAILDLSVFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KEVTLETLVKDLKKKIPSLSFSPLKPNGRISVEGSFLAVKRLRESLLARACSLLEKDRNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KEVTLETLVKDLKKKIPSLSFSPLKPNGRISVEGSFLAVKRLRESLLARACSLLEKDRNF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGEMLVLDTDVFLYLKHKCGSYEST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 TSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGEMLVLDTDVFLYLKHKCGSYEST
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHVKELIEEWSHALYLKLRKETFILEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHVKELIEEWSHALYLKLRKETFILEG
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KE0 KENREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGSSSDTYLFKKGVMKLIGQKVS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KENREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGSSSDTYLFKKGVMKLIGQKVS
              310       320       330       340       350       




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 03:10:51 2016 done: Sat Nov  5 03:10:52 2016
 Total Scan time:  2.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]