FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0783, 352 aa
  1>>>pF1KE0783 352 - 352 aa - 352 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4111+/-0.000724; mu= 7.3906+/- 0.043
 mean_var=140.2648+/-28.646, 0's: 0 Z-trim(114.4): 59  B-trim: 0 in 0/53
 Lambda= 0.108293
 statistics sampled from 14866 (14927) to 14866 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.459), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS74304.1 HSH2D gene_id:84941|Hs108|chr19        ( 352) 2423 389.5 2.3e-108
CCDS45315.1 SH2D7 gene_id:646892|Hs108|chr15       ( 451)  365 68.0 1.7e-11


>>CCDS74304.1 HSH2D gene_id:84941|Hs108|chr19             (352 aa)
 initn: 2423 init1: 2423 opt: 2423  Z-score: 2059.0  bits: 389.5 E(32554): 2.3e-108
Smith-Waterman score: 2423; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KE0 MTEAGKLPLPLPPRLDWFVHTQMGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTEAGKLPLPLPPRLDWFVHTQMGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRREL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LTQPCRQKDPANVDYEDLFLYSNAVAEEAACPVSAPEEASPKPVLCHQSKERKPSAEMNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LTQPCRQKDPANVDYEDLFLYSNAVAEEAACPVSAPEEASPKPVLCHQSKERKPSAEMNR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQRVRQQLKSHLATVNLSSLLDVRRST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQRVRQQLKSHLATVNLSSLLDVRRST
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VISGPGTGKGSQDHSGDPTSGDRGYTDPCVATSLKSPSQPQAPKDRKVPTRKAERSVSCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VISGPGTGKGSQDHSGDPTSGDRGYTDPCVATSLKSPSQPQAPKDRKVPTRKAERSVSCI
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KE0 EVTPGDRSWHQMVVRALSSQESKPEHQGLAEPENDQLPEEYQQPPPFAPGYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EVTPGDRSWHQMVVRALSSQESKPEHQGLAEPENDQLPEEYQQPPPFAPGYC
              310       320       330       340       350  

>>CCDS45315.1 SH2D7 gene_id:646892|Hs108|chr15            (451 aa)
 initn: 347 init1: 291 opt: 365  Z-score: 319.8  bits: 68.0 E(32554): 1.7e-11
Smith-Waterman score: 375; 28.8% identity (57.6% similar) in 330 aa overlap (15-328:31-345)

                               10        20        30         40   
pF1KE0                 MTEAGKLPLPLPPRLDWFVHTQMGQLAQDG-VPEWFHGAISRED
                                     : ::..::   . :.: .: :::: :.:..
CCDS45 MEDSLKQLSLGRDPEGAGDSQALAELQELALKWFMETQAPFILQNGALPPWFHGFITRKQ
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KE0 AENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLD
       .:.::... :::::::.:   .:: :::.... : ::... : .  ..: :.  .:..: 
CCDS45 TEQLLRDKALGSFLIRLSDRATGYILSYRGSDRCRHFVINQLRNRRYIISGDTQSHSTLA
               70        80        90       100       110       120

           110       120        130       140       150            
pF1KE0 ALVTFHQQKPIEPRRELLTQPC-RQKDPANVDYEDLFLYSNAVAEEAACPVSA-----PE
        ::  .:.  .:: .:.::  : : .:    :     :... :  :   :..:     :.
CCDS45 ELVHHYQEAQLEPFKEMLTAACPRPEDNDLYDAITRGLHQTIVDPENP-PATAFLTVVPD
              130       140       150       160        170         

            160       170        180       190        200       210
pF1KE0 EA-----SPKPVLCHQSKERKPSAEMN-RITTKEATSSCPPK-SPLGETRQKLWRSLKML
       .:     :::: .     ..  : ... :  ..: .   : . ::: :  ..: .     
CCDS45 KAASPRSSPKPQVSFLHAQK--SLDVSPRNLSQEESMEAPIRVSPLPEKSSSLLEESFGG
     180       190         200       210       220       230       

              220        230       240       250       260         
pF1KE0 PERGQRVRQQLKS-HLATVNLSSLLDVRRSTVISGPGTGKGSQDHSGDPTSGDRGYTDPC
       :  .. .  .:.  . : ..:..  . :.. : .:  . . ... .   ..:...  :  
CCDS45 P--SDIIYADLRRMNQARLGLGTEGSGRHGPVPAGSQAYSPGREAQRRLSDGEQNRPDG-
         240       250       260       270       280       290     

     270       280       290       300        310       320        
pF1KE0 VATSLKSPSQPQAPKDRKVPTRKAERSVSCIEVTPG-DRSWHQMVVRALSSQESKPEHQG
       ..  :.. :  :.: .   ::     : .: ..  .   .:.:   .   :::..:  ::
CCDS45 LGPVLSGVSPDQGPTES--PT-----SWGCSDAMGSLGATWRQEFPKL--SQEAQPCSQG
          300       310              320       330         340     

      330       340       350                                      
pF1KE0 LAEPENDQLPEEYQQPPPFAPGYC                                    
                                                                   
CCDS45 SSADIYEFIGTEGLLQEARDTPDQEGSTYEQIPACWGGPARAPHPGASPTYSPWVHGYKR
         350       360       370       380       390       400     




352 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:40:06 2016 done: Sat Nov  5 18:40:06 2016
 Total Scan time:  2.910 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]