Result of FASTA (omim) for
pF1KE0693
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0693, 282 aa
1>>>pF1KE0693 282 - 282 aa - 282 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7764+/-0.000517; mu= 9.3667+/- 0.033
mean_var=428.4206+/-91.902, 0's: 0 Z-trim(119.9): 132 B-trim: 1660 in 1/55
Lambda= 0.061964
statistics sampled from 34244 (34413) to 34244 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.403), width: 16
Scan time: 6.670
The best scores are: opt bits E(85289)
NP_037425 (OMIM: 602718) transformer-2 protein hom ( 282) 1933 186.5 5e-47
XP_016867578 (OMIM: 602718) PREDICTED: transformer ( 181) 1268 126.7 3.2e-29
XP_016867579 (OMIM: 602718) PREDICTED: transformer ( 181) 1268 126.7 3.2e-29
NP_001269687 (OMIM: 602718) transformer-2 protein ( 181) 1268 126.7 3.2e-29
XP_005249782 (OMIM: 602718) PREDICTED: transformer ( 181) 1268 126.7 3.2e-29
NP_001269686 (OMIM: 602718) transformer-2 protein ( 181) 1268 126.7 3.2e-29
NP_001269688 (OMIM: 602718) transformer-2 protein ( 180) 1249 125.0 1e-28
NP_004584 (OMIM: 602719) transformer-2 protein hom ( 288) 1163 117.6 2.7e-26
NP_001230808 (OMIM: 602719) transformer-2 protein ( 188) 838 88.3 1.2e-17
XP_005247760 (OMIM: 602719) PREDICTED: transformer ( 188) 838 88.3 1.2e-17
XP_016862522 (OMIM: 602719) PREDICTED: transformer ( 188) 838 88.3 1.2e-17
XP_011511374 (OMIM: 602719) PREDICTED: transformer ( 188) 838 88.3 1.2e-17
XP_011513633 (OMIM: 602718) PREDICTED: transformer ( 219) 806 85.5 9.5e-17
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168) 328 42.6 0.00061
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168) 328 42.6 0.00061
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172) 328 42.6 0.00061
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172) 328 42.6 0.00061
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202) 328 42.7 0.00066
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297) 328 43.0 0.0008
NP_001287998 (OMIM: 180740) U1 small nuclear ribon ( 428) 328 43.3 0.00095
NP_003080 (OMIM: 180740) U1 small nuclear ribonucl ( 437) 320 42.6 0.0016
NP_006734 (OMIM: 300027) RNA-binding protein 3 [Ho ( 157) 302 40.2 0.0029
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221) 286 39.0 0.0094
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221) 286 39.0 0.0094
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221) 286 39.0 0.0094
>>NP_037425 (OMIM: 602718) transformer-2 protein homolog (282 aa)
initn: 1933 init1: 1933 opt: 1933 Z-score: 965.2 bits: 186.5 E(85289): 5e-47
Smith-Waterman score: 1933; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE0 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR
190 200 210 220 230 240
250 260 270 280
pF1KE0 GYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
::::::::::::::::::::::::::::::::::::::::::
NP_037 GYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
250 260 270 280
>>XP_016867578 (OMIM: 602718) PREDICTED: transformer-2 p (181 aa)
initn: 1268 init1: 1268 opt: 1268 Z-score: 645.6 bits: 126.7 E(85289): 3.2e-29
Smith-Waterman score: 1268; 100.0% identity (100.0% similar) in 181 aa overlap (102-282:1-181)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::::::::::::::::::::::::::::::
XP_016 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
260 270 280
pF1KE0 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
:::::::::::::::::::::::::::::::
XP_016 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
160 170 180
>>XP_016867579 (OMIM: 602718) PREDICTED: transformer-2 p (181 aa)
initn: 1268 init1: 1268 opt: 1268 Z-score: 645.6 bits: 126.7 E(85289): 3.2e-29
Smith-Waterman score: 1268; 100.0% identity (100.0% similar) in 181 aa overlap (102-282:1-181)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::::::::::::::::::::::::::::::
XP_016 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
260 270 280
pF1KE0 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
:::::::::::::::::::::::::::::::
XP_016 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
160 170 180
>>NP_001269687 (OMIM: 602718) transformer-2 protein homo (181 aa)
initn: 1268 init1: 1268 opt: 1268 Z-score: 645.6 bits: 126.7 E(85289): 3.2e-29
Smith-Waterman score: 1268; 100.0% identity (100.0% similar) in 181 aa overlap (102-282:1-181)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::::::::::::::::::::::::::::::
NP_001 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
260 270 280
pF1KE0 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
:::::::::::::::::::::::::::::::
NP_001 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
160 170 180
>>XP_005249782 (OMIM: 602718) PREDICTED: transformer-2 p (181 aa)
initn: 1268 init1: 1268 opt: 1268 Z-score: 645.6 bits: 126.7 E(85289): 3.2e-29
Smith-Waterman score: 1268; 100.0% identity (100.0% similar) in 181 aa overlap (102-282:1-181)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::::::::::::::::::::::::::::::
XP_005 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
260 270 280
pF1KE0 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
:::::::::::::::::::::::::::::::
XP_005 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
160 170 180
>>NP_001269686 (OMIM: 602718) transformer-2 protein homo (181 aa)
initn: 1268 init1: 1268 opt: 1268 Z-score: 645.6 bits: 126.7 E(85289): 3.2e-29
Smith-Waterman score: 1268; 100.0% identity (100.0% similar) in 181 aa overlap (102-282:1-181)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::::::::::::::::::::::::::::::
NP_001 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
260 270 280
pF1KE0 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
:::::::::::::::::::::::::::::::
NP_001 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
160 170 180
>>NP_001269688 (OMIM: 602718) transformer-2 protein homo (180 aa)
initn: 1236 init1: 1102 opt: 1249 Z-score: 636.5 bits: 125.0 E(85289): 1e-28
Smith-Waterman score: 1249; 99.4% identity (99.4% similar) in 181 aa overlap (102-282:1-180)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::::::::::::::::::::::::::::::
NP_001 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
260 270 280
pF1KE0 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
::::::: :::::::::::::::::::::::
NP_001 YDYRYRR-SPSPYYSRYRSRSRSRSYSPRRY
160 170 180
>>NP_004584 (OMIM: 602719) transformer-2 protein homolog (288 aa)
initn: 986 init1: 800 opt: 1163 Z-score: 593.2 bits: 117.6 E(85289): 2.7e-26
Smith-Waterman score: 1189; 65.2% identity (78.7% similar) in 305 aa overlap (1-282:1-288)
10 20 30 40 50
pF1KE0 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRV-SKHSESHSRSRSKSRSR
::: :.:. ::::: :.: .. . :: .. .:: :. :..:.:.:::::.::::
NP_004 MSDSGEQNYGERESRSASRSGSAHGSG-KSARHTPARSRSKEDSRRSRSKSRSRSESRSR
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 SRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNT
::: :.:.::::::.:.:::: ::::::. .::::.:.::::::.::::.:.:::::::
NP_004 SRRSSRRHYTRSRSRSRSHRR-SRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMER
:::::::::::::::::::::.:::.. :..::::.. ::::::::::: .::.::: ::
NP_004 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 ANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYD
::::::::::::::.::::: :::::::::::::. :..:::: :::
NP_004 ANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYD
180 190 200 210 220
240 250 260 270
pF1KE0 RGYDRGYDRYEDYD--YR------------------YRRRSPSPYYSR--YRSRSRSRSY
:::::::: . :. :: :::::::::::: ::::::::::
NP_004 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY
230 240 250 260 270 280
280
pF1KE0 SPRRY
:::::
NP_004 SPRRY
>>NP_001230808 (OMIM: 602719) transformer-2 protein homo (188 aa)
initn: 871 init1: 658 opt: 838 Z-score: 437.7 bits: 88.3 E(85289): 1.2e-17
Smith-Waterman score: 864; 68.5% identity (77.3% similar) in 203 aa overlap (102-282:1-188)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::.::::.:.::::::: ::::::::::::
NP_001 MSTRRRHVGNRANPDPNCCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
:::::::::.:::.. :..::::.. ::::::::::: .::.::: ::::::::::::::
NP_001 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::.::::: :::::::::::::. :..:::: ::::::::::: .
NP_001 VDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYDRGYDRGYDDRDY
100 110 120 130
260 270 280
pF1KE0 YD--YR------------------YRRRSPSPYYSR--YRSRSRSRSYSPRRY
:. :: :::::::::::: :::::::::::::::
NP_001 YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
140 150 160 170 180
>>XP_005247760 (OMIM: 602719) PREDICTED: transformer-2 p (188 aa)
initn: 871 init1: 658 opt: 838 Z-score: 437.7 bits: 88.3 E(85289): 1.2e-17
Smith-Waterman score: 864; 68.5% identity (77.3% similar) in 203 aa overlap (102-282:1-188)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::.::::.:.::::::: ::::::::::::
XP_005 MSTRRRHVGNRANPDPNCCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
:::::::::.:::.. :..::::.. ::::::::::: .::.::: ::::::::::::::
XP_005 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::.::::: :::::::::::::. :..:::: ::::::::::: .
XP_005 VDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYDRGYDRGYDDRDY
100 110 120 130
260 270 280
pF1KE0 YD--YR------------------YRRRSPSPYYSR--YRSRSRSRSYSPRRY
:. :: :::::::::::: :::::::::::::::
XP_005 YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
140 150 160 170 180
282 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:48:37 2016 done: Sat Nov 5 02:48:38 2016
Total Scan time: 6.670 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]