Result of FASTA (omim) for
pF1KE0681
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0681, 270 aa
1>>>pF1KE0681 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6975+/-0.000491; mu= 11.0828+/- 0.030
mean_var=337.7530+/-79.176, 0's: 0 Z-trim(116.0): 176 B-trim: 1242 in 1/56
Lambda= 0.069787
statistics sampled from 26547 (26793) to 26547 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.314), width: 16
Scan time: 5.500
The best scores are: opt bits E(85289)
NP_998734 (OMIM: 605491) nebulette isoform 2 [Homo ( 270) 1874 202.4 7.1e-52
NP_001166955 (OMIM: 605491) nebulette isoform 3 [H ( 224) 1473 161.9 9.3e-40
XP_005252400 (OMIM: 605491) PREDICTED: nebulette i ( 933) 1175 133.0 1.9e-30
NP_006139 (OMIM: 602920) LIM and SH3 domain protei ( 261) 1102 124.7 1.8e-28
XP_005252399 (OMIM: 605491) PREDICTED: nebulette i ( 980) 654 80.6 1.2e-14
XP_016870957 (OMIM: 605491) PREDICTED: nebulette i ( 998) 654 80.6 1.2e-14
XP_016870956 (OMIM: 605491) PREDICTED: nebulette i ( 998) 654 80.6 1.2e-14
XP_011517593 (OMIM: 605491) PREDICTED: nebulette i ( 998) 654 80.6 1.2e-14
NP_006384 (OMIM: 605491) nebulette isoform 1 [Homo (1014) 654 80.6 1.2e-14
NP_001258537 (OMIM: 602920) LIM and SH3 domain pro ( 205) 572 71.1 1.8e-12
XP_005252401 (OMIM: 605491) PREDICTED: nebulette i ( 880) 535 68.5 4.7e-11
XP_005269924 (OMIM: 602873) PREDICTED: nebulin-rel (1627) 387 54.1 1.9e-06
NP_001309874 (OMIM: 602873) nebulin-related-anchor (1694) 387 54.1 2e-06
XP_011538134 (OMIM: 602873) PREDICTED: nebulin-rel (1695) 387 54.1 2e-06
NP_006166 (OMIM: 602873) nebulin-related-anchoring (1695) 387 54.1 2e-06
XP_005269922 (OMIM: 602873) PREDICTED: nebulin-rel (1695) 387 54.1 2e-06
XP_006717933 (OMIM: 602873) PREDICTED: nebulin-rel (1696) 387 54.1 2e-06
XP_005269921 (OMIM: 602873) PREDICTED: nebulin-rel (1696) 387 54.1 2e-06
NP_932326 (OMIM: 602873) nebulin-related-anchoring (1730) 387 54.2 2e-06
NP_001248392 (OMIM: 602873) nebulin-related-anchor (1731) 387 54.2 2e-06
NP_004534 (OMIM: 161650,256030) nebulin isoform 3 (6669) 333 49.8 0.00016
XP_011509529 (OMIM: 161650,256030) PREDICTED: nebu (7067) 333 49.8 0.00017
XP_005246674 (OMIM: 161650,256030) PREDICTED: nebu (7553) 333 49.9 0.00017
XP_011509528 (OMIM: 161650,256030) PREDICTED: nebu (7796) 333 49.9 0.00017
XP_016859674 (OMIM: 161650,256030) PREDICTED: nebu (8184) 333 49.9 0.00018
XP_016859673 (OMIM: 161650,256030) PREDICTED: nebu (8277) 333 49.9 0.00018
XP_005246672 (OMIM: 161650,256030) PREDICTED: nebu (8277) 333 49.9 0.00018
XP_016859672 (OMIM: 161650,256030) PREDICTED: nebu (8277) 333 49.9 0.00018
XP_011509527 (OMIM: 161650,256030) PREDICTED: nebu (8277) 333 49.9 0.00018
XP_005246669 (OMIM: 161650,256030) PREDICTED: nebu (8282) 333 49.9 0.00018
XP_005246670 (OMIM: 161650,256030) PREDICTED: nebu (8282) 333 49.9 0.00018
XP_005246667 (OMIM: 161650,256030) PREDICTED: nebu (8308) 333 49.9 0.00018
XP_005246668 (OMIM: 161650,256030) PREDICTED: nebu (8308) 333 49.9 0.00018
XP_016859671 (OMIM: 161650,256030) PREDICTED: nebu (8308) 333 49.9 0.00018
XP_005246665 (OMIM: 161650,256030) PREDICTED: nebu (8339) 333 49.9 0.00018
XP_016859670 (OMIM: 161650,256030) PREDICTED: nebu (8339) 333 49.9 0.00018
XP_005246663 (OMIM: 161650,256030) PREDICTED: nebu (8370) 333 49.9 0.00018
XP_005246660 (OMIM: 161650,256030) PREDICTED: nebu (8370) 333 49.9 0.00018
XP_005246661 (OMIM: 161650,256030) PREDICTED: nebu (8370) 333 49.9 0.00018
XP_016859668 (OMIM: 161650,256030) PREDICTED: nebu (8370) 333 49.9 0.00018
XP_006712604 (OMIM: 161650,256030) PREDICTED: nebu (8370) 333 49.9 0.00018
XP_016859669 (OMIM: 161650,256030) PREDICTED: nebu (8370) 333 49.9 0.00018
XP_006712605 (OMIM: 161650,256030) PREDICTED: nebu (8370) 333 49.9 0.00018
XP_005246658 (OMIM: 161650,256030) PREDICTED: nebu (8401) 333 49.9 0.00018
XP_005246659 (OMIM: 161650,256030) PREDICTED: nebu (8401) 333 49.9 0.00018
XP_005246656 (OMIM: 161650,256030) PREDICTED: nebu (8432) 333 49.9 0.00018
XP_005246657 (OMIM: 161650,256030) PREDICTED: nebu (8432) 333 49.9 0.00018
XP_005246655 (OMIM: 161650,256030) PREDICTED: nebu (8463) 333 49.9 0.00018
XP_016859667 (OMIM: 161650,256030) PREDICTED: nebu (8463) 333 49.9 0.00018
XP_005246653 (OMIM: 161650,256030) PREDICTED: nebu (8463) 333 49.9 0.00018
>>NP_998734 (OMIM: 605491) nebulette isoform 2 [Homo sap (270 aa)
initn: 1874 init1: 1874 opt: 1874 Z-score: 1052.3 bits: 202.4 E(85289): 7.1e-52
Smith-Waterman score: 1874; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)
10 20 30 40 50 60
pF1KE0 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 KYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
190 200 210 220 230 240
250 260 270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
::::::::::::::::::::::::::::::
NP_998 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
250 260 270
>>NP_001166955 (OMIM: 605491) nebulette isoform 3 [Homo (224 aa)
initn: 1473 init1: 1473 opt: 1473 Z-score: 834.8 bits: 161.9 E(85289): 9.3e-40
Smith-Waterman score: 1473; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE0 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
::::::::::::::::::::::::::::::::
NP_001 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLDLPSHVRLQCPG
190 200 210 220
250 260 270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
>>XP_005252400 (OMIM: 605491) PREDICTED: nebulette isofo (933 aa)
initn: 1092 init1: 1092 opt: 1175 Z-score: 667.4 bits: 133.0 E(85289): 1.9e-30
Smith-Waterman score: 1175; 79.9% identity (90.2% similar) in 224 aa overlap (49-270:711-933)
20 30 40 50 60 70
pF1KE0 NCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ--SFTTVADTPENLRLKQ
.: :..: : ::.. ::: :.:.
XP_005 EQLSAVKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKK
690 700 710 720 730 740
80 90 100 110 120 130
pF1KE0 QSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTP
..: :.::: .: .. ::: :.. ::: ....:..:..:: :::::::::::::::::
XP_005 NQENISSVKYTQDHKQMKGRP-SLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTP
750 760 770 780 790
140 150 160 170 180 190
pF1KE0 VVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVLPGAYQQSHSQGYGYMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVLPGAYQQSHSQGYGYMH
800 810 820 830 840 850
200 210 220 230 240 250
pF1KE0 QTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTG
860 870 880 890 900 910
260 270
pF1KE0 RTGMLPANYIEFVN
::::::::::::::
XP_005 RTGMLPANYIEFVN
920 930
>>NP_006139 (OMIM: 602920) LIM and SH3 domain protein 1 (261 aa)
initn: 1153 init1: 813 opt: 1102 Z-score: 632.3 bits: 124.7 E(85289): 1.8e-28
Smith-Waterman score: 1130; 63.6% identity (82.7% similar) in 272 aa overlap (1-269:1-261)
10 20 30 40 50 60
pF1KE0 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
:::.::::::.::::::::::::.:::.:::::.:::.:::.::::::::::::::::::
NP_006 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
::: ::::::::::::::::::::.::..::..::.:::.:.:::::::.:.::.::::.
NP_006 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 KYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIV-APV
::::.:::.. . : . . : :...: . ..:. .: .:... : . :::
NP_006 KYHEEFEKSR---MGPSGGEGM-EPERRDSQ--DGSSYR--RP--LEQQQPHHIPTSAPV
130 140 150 160 170
180 190 200 210 220 230
pF1KE0 LPGAYQQSHSQGYGYMHQTS--VSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYI
:: .:.:: ... . :: .:: . . : :::.::::: :::::::.::: :
NP_006 YQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKR-YRAVYDYSAADEDEVSFQDGDTI
180 190 200 210 220
240 250 260 270
pF1KE0 VNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN
:::: ::::::::::.::: ::::::::.: .
NP_006 VNVQQIDDGWMYGTVERTGDTGMLPANYVEAI
230 240 250 260
>>XP_005252399 (OMIM: 605491) PREDICTED: nebulette isofo (980 aa)
initn: 863 init1: 654 opt: 654 Z-score: 383.8 bits: 80.6 E(85289): 1.2e-14
Smith-Waterman score: 999; 59.3% identity (66.7% similar) in 300 aa overlap (54-270:682-980)
30 40 50 60 70 80
pF1KE0 YWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ--SFTTVADTPENLRLKQQSELQ
:..: : ::.. ::: :.:...:
XP_005 VKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENI
660 670 680 690 700 710
90 100 110 120 130 140
pF1KE0 SQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDP
:.::: .: .. ::: :.. ::: ....:..:..:: ::::::::::::::::::::::
XP_005 SSVKYTQDHKQMKGRP-SLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDP
720 730 740 750 760 770
150 160 170
pF1KE0 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIV-------------------------
:::::::::::::::::::::::::::::::::::
XP_005 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSR
780 790 800 810 820 830
180
pF1KE0 --------------------------------------------------------APVL
::::
XP_005 SLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVL
840 850 860 870 880 890
190 200 210 220 230 240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
900 910 920 930 940 950
250 260 270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
::::::::::::::::::::::::::::::
XP_005 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
960 970 980
>>XP_016870957 (OMIM: 605491) PREDICTED: nebulette isofo (998 aa)
initn: 863 init1: 654 opt: 654 Z-score: 383.7 bits: 80.6 E(85289): 1.2e-14
Smith-Waterman score: 999; 59.3% identity (66.7% similar) in 300 aa overlap (54-270:700-998)
30 40 50 60 70 80
pF1KE0 YWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ--SFTTVADTPENLRLKQQSELQ
:..: : ::.. ::: :.:...:
XP_016 VKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENI
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE0 SQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDP
:.::: .: .. ::: :.. ::: ....:..:..:: ::::::::::::::::::::::
XP_016 SSVKYTQDHKQMKGRP-SLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDP
730 740 750 760 770 780
150 160 170
pF1KE0 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIV-------------------------
:::::::::::::::::::::::::::::::::::
XP_016 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSR
790 800 810 820 830 840
180
pF1KE0 --------------------------------------------------------APVL
::::
XP_016 SLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVL
850 860 870 880 890 900
190 200 210 220 230 240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
910 920 930 940 950 960
250 260 270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
::::::::::::::::::::::::::::::
XP_016 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
970 980 990
>>XP_016870956 (OMIM: 605491) PREDICTED: nebulette isofo (998 aa)
initn: 863 init1: 654 opt: 654 Z-score: 383.7 bits: 80.6 E(85289): 1.2e-14
Smith-Waterman score: 999; 59.3% identity (66.7% similar) in 300 aa overlap (54-270:700-998)
30 40 50 60 70 80
pF1KE0 YWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ--SFTTVADTPENLRLKQQSELQ
:..: : ::.. ::: :.:...:
XP_016 VKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENI
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE0 SQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDP
:.::: .: .. ::: :.. ::: ....:..:..:: ::::::::::::::::::::::
XP_016 SSVKYTQDHKQMKGRP-SLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDP
730 740 750 760 770 780
150 160 170
pF1KE0 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIV-------------------------
:::::::::::::::::::::::::::::::::::
XP_016 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSR
790 800 810 820 830 840
180
pF1KE0 --------------------------------------------------------APVL
::::
XP_016 SLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVL
850 860 870 880 890 900
190 200 210 220 230 240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
910 920 930 940 950 960
250 260 270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
::::::::::::::::::::::::::::::
XP_016 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
970 980 990
>>XP_011517593 (OMIM: 605491) PREDICTED: nebulette isofo (998 aa)
initn: 863 init1: 654 opt: 654 Z-score: 383.7 bits: 80.6 E(85289): 1.2e-14
Smith-Waterman score: 999; 59.3% identity (66.7% similar) in 300 aa overlap (54-270:700-998)
30 40 50 60 70 80
pF1KE0 YWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ--SFTTVADTPENLRLKQQSELQ
:..: : ::.. ::: :.:...:
XP_011 VKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENI
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE0 SQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDP
:.::: .: .. ::: :.. ::: ....:..:..:: ::::::::::::::::::::::
XP_011 SSVKYTQDHKQMKGRP-SLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDP
730 740 750 760 770 780
150 160 170
pF1KE0 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIV-------------------------
:::::::::::::::::::::::::::::::::::
XP_011 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSR
790 800 810 820 830 840
180
pF1KE0 --------------------------------------------------------APVL
::::
XP_011 SLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVL
850 860 870 880 890 900
190 200 210 220 230 240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
910 920 930 940 950 960
250 260 270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
::::::::::::::::::::::::::::::
XP_011 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
970 980 990
>>NP_006384 (OMIM: 605491) nebulette isoform 1 [Homo sap (1014 aa)
initn: 863 init1: 654 opt: 654 Z-score: 383.6 bits: 80.6 E(85289): 1.2e-14
Smith-Waterman score: 999; 59.3% identity (66.7% similar) in 300 aa overlap (54-270:716-1014)
30 40 50 60 70 80
pF1KE0 YWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ--SFTTVADTPENLRLKQQSELQ
:..: : ::.. ::: :.:...:
NP_006 VKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENI
690 700 710 720 730 740
90 100 110 120 130 140
pF1KE0 SQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDP
:.::: .: .. ::: :.. ::: ....:..:..:: ::::::::::::::::::::::
NP_006 SSVKYTQDHKQMKGRP-SLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDP
750 760 770 780 790 800
150 160 170
pF1KE0 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIV-------------------------
:::::::::::::::::::::::::::::::::::
NP_006 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSR
810 820 830 840 850 860
180
pF1KE0 --------------------------------------------------------APVL
::::
NP_006 SLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVL
870 880 890 900 910 920
190 200 210 220 230 240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
930 940 950 960 970 980
250 260 270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
::::::::::::::::::::::::::::::
NP_006 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
990 1000 1010
>>NP_001258537 (OMIM: 602920) LIM and SH3 domain protein (205 aa)
initn: 590 init1: 321 opt: 572 Z-score: 344.8 bits: 71.1 E(85289): 1.8e-12
Smith-Waterman score: 573; 50.8% identity (75.9% similar) in 199 aa overlap (74-269:19-205)
50 60 70 80 90 100
pF1KE0 YKGYEKKPYCNAHYPKQSFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTD
:.... :: .:.::..::..::.:::.:.:
NP_001 MLPLRDLQDDTEHEELQGLREEALLQ-RVRYKEEFEKNKGKGFSVVAD
10 20 30 40
110 120 130 140 150 160
pF1KE0 TPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHP
::::::.:.::.::::.::::.:::.. . : . . : :...: . ..:. .:
NP_001 TPELQRIKKTQDQISNIKYHEEFEKSR---MGPSGGEGM-EPERRDSQ--DGSSYR--RP
50 60 70 80 90
170 180 190 200 210 220
pF1KE0 HIVEMDRRPGIIV-APVLPGAYQQSHSQGYGYMHQTS--VSSMRSMQHSPNLRTYRAMYD
.:... : . ::: :: .:.:: ... . :: .:: . . : :::.::
NP_001 --LEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKR-YRAVYD
100 110 120 130 140 150
230 240 250 260 270
pF1KE0 YSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN
::: :::::::.::: ::::: ::::::::::.::: ::::::::.: .
NP_001 YSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI
160 170 180 190 200
270 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:18:02 2016 done: Sat Nov 5 04:18:03 2016
Total Scan time: 5.500 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]