FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0681, 270 aa
  1>>>pF1KE0681 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3192+/-0.00105; mu= 6.3812+/- 0.062
 mean_var=198.6541+/-42.209, 0's: 0 Z-trim(108.9): 133  B-trim: 0 in 0/52
 Lambda= 0.090997
 statistics sampled from 10392 (10538) to 10392 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.324), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS7133.1 NEBL gene_id:10529|Hs108|chr10          ( 270) 1874 258.4 3.8e-69
CCDS11331.1 LASP1 gene_id:3927|Hs108|chr17         ( 261) 1102 157.1 1.2e-38
CCDS7134.1 NEBL gene_id:10529|Hs108|chr10          (1014)  654 98.9 1.5e-20
CCDS62164.1 LASP1 gene_id:3927|Hs108|chr17         ( 205)  572 87.4 9.1e-18


>>CCDS7133.1 NEBL gene_id:10529|Hs108|chr10               (270 aa)
 initn: 1874 init1: 1874 opt: 1874  Z-score: 1354.8  bits: 258.4 E(32554): 3.8e-69
Smith-Waterman score: 1874; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KE0 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 KYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVAPVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
              190       200       210       220       230       240

              250       260       270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
       ::::::::::::::::::::::::::::::
CCDS71 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
              250       260       270

>>CCDS11331.1 LASP1 gene_id:3927|Hs108|chr17              (261 aa)
 initn: 1153 init1: 813 opt: 1102  Z-score: 807.2  bits: 157.1 E(32554): 1.2e-38
Smith-Waterman score: 1130; 63.6% identity (82.7% similar) in 272 aa overlap (1-269:1-261)

               10        20        30        40        50        60
pF1KE0 MNPQCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ
       :::.::::::.::::::::::::.:::.:::::.:::.:::.::::::::::::::::::
CCDS11 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNV
       ::: ::::::::::::::::::::.::..::..::.:::.:.:::::::.:.::.::::.
CCDS11 SFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNI
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE0 KYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIV-APV
       ::::.:::..   . :   . . :  :...:  . ..:.  .:  .:...   : . :::
CCDS11 KYHEEFEKSR---MGPSGGEGM-EPERRDSQ--DGSSYR--RP--LEQQQPHHIPTSAPV
              130           140         150           160       170

     180       190         200       210       220       230       
pF1KE0 LPGAYQQSHSQGYGYMHQTS--VSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYI
            ::  .:.:: ... .  :: .::   . . : :::.::::: :::::::.::: :
CCDS11 YQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKR-YRAVYDYSAADEDEVSFQDGDTI
              180       190       200        210       220         

       240       250       260       270
pF1KE0 VNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN
       :::: ::::::::::.::: ::::::::.: . 
CCDS11 VNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 
     230       240       250       260  

>>CCDS7134.1 NEBL gene_id:10529|Hs108|chr10               (1014 aa)
 initn: 863 init1: 654 opt: 654  Z-score: 482.3  bits: 98.9 E(32554): 1.5e-20
Smith-Waterman score: 999; 59.3% identity (66.7% similar) in 300 aa overlap (54-270:716-1014)

            30        40        50        60          70        80 
pF1KE0 YWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ--SFTTVADTPENLRLKQQSELQ
                                     :..:  :    ::.. :::  :.:...:  
CCDS71 VKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENI
         690       700       710       720       730       740     

              90       100       110       120       130       140 
pF1KE0 SQVKYKRDFEESKGRGFSIVTDTPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDP
       :.::: .: .. :::  :.. ::: ....:..:..:: ::::::::::::::::::::::
CCDS71 SSVKYTQDHKQMKGRP-SLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDP
         750       760        770       780       790       800    

             150       160       170                               
pF1KE0 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIV-------------------------
       :::::::::::::::::::::::::::::::::::                         
CCDS71 VTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSR
          810       820       830       840       850       860    

                                                                180
pF1KE0 --------------------------------------------------------APVL
                                                               ::::
CCDS71 SLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVL
          870       880       890       900       910       920    

              190       200       210       220       230       240
pF1KE0 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 PGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNV
          930       940       950       960       970       980    

              250       260       270
pF1KE0 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
       ::::::::::::::::::::::::::::::
CCDS71 QPIDDGWMYGTVQRTGRTGMLPANYIEFVN
          990      1000      1010    

>>CCDS62164.1 LASP1 gene_id:3927|Hs108|chr17              (205 aa)
 initn: 590 init1: 321 opt: 572  Z-score: 432.5  bits: 87.4 E(32554): 9.1e-18
Smith-Waterman score: 573; 50.8% identity (75.9% similar) in 199 aa overlap (74-269:19-205)

            50        60        70        80        90       100   
pF1KE0 YKGYEKKPYCNAHYPKQSFTTVADTPENLRLKQQSELQSQVKYKRDFEESKGRGFSIVTD
                                     :.... :: .:.::..::..::.:::.:.:
CCDS62             MLPLRDLQDDTEHEELQGLREEALLQ-RVRYKEEFEKNKGKGFSVVAD
                           10        20         30        40       

           110       120       130       140       150       160   
pF1KE0 TPELQRLKRTQEQISNVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHP
       ::::::.:.::.::::.::::.:::..   . :   . . :  :...:  . ..:.  .:
CCDS62 TPELQRIKKTQDQISNIKYHEEFEKSR---MGPSGGEGM-EPERRDSQ--DGSSYR--RP
        50        60        70           80         90             

           170        180       190         200       210       220
pF1KE0 HIVEMDRRPGIIV-APVLPGAYQQSHSQGYGYMHQTS--VSSMRSMQHSPNLRTYRAMYD
         .:...   : . :::     ::  .:.:: ... .  :: .::   . . : :::.::
CCDS62 --LEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKR-YRAVYD
       100       110       120       130       140       150       

              230       240       250       260       270
pF1KE0 YSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN
       ::: :::::::.::: ::::: ::::::::::.::: ::::::::.: . 
CCDS62 YSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 
        160       170       180       190       200      




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:18:01 2016 done: Sat Nov  5 04:18:01 2016
 Total Scan time:  1.900 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]