Result of FASTA (ccds) for
pF1KE0568
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0568, 288 aa
1>>>pF1KE0568 288 - 288 aa - 288 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3777+/-0.00208; mu= 6.0476+/- 0.127
mean_var=431.5198+/-83.126, 0's: 0 Z-trim(107.9): 164 B-trim: 31 in 1/49
Lambda= 0.061741
statistics sampled from 9724 (9865) to 9724 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.512), E-opt: 0.2 (0.303), width: 16
Scan time: 1.980
The best scores are: opt bits E(32554)
CCDS31330.1 1 gene_id:387264|Hs108|chr11 ( 278) 1682 163.9 1.2e-40
CCDS41684.1 10 gene_id:387273|Hs108|chr11 ( 202) 1243 124.6 5.9e-29
CCDS41591.1 3 gene_id:387266|Hs108|chr11 ( 238) 1193 120.3 1.4e-27
CCDS41592.1 5 gene_id:439915|Hs108|chr11 ( 237) 1189 119.9 1.8e-27
CCDS41683.1 8 gene_id:57830|Hs108|chr11 ( 187) 1030 105.6 2.9e-23
CCDS53677.1 9 gene_id:3846|Hs108|chr11 ( 169) 953 98.6 3.2e-21
CCDS41682.1 7 gene_id:440050|Hs108|chr11 ( 165) 892 93.2 1.4e-19
CCDS31331.1 2 gene_id:440021|Hs108|chr11 ( 177) 850 89.5 1.9e-18
CCDS31332.1 6 gene_id:440023|Hs108|chr11 ( 129) 705 76.4 1.2e-14
CCDS41685.1 11 gene_id:440051|Hs108|chr11 ( 156) 697 75.8 2.2e-14
>>CCDS31330.1 1 gene_id:387264|Hs108|chr11 (278 aa)
initn: 2317 init1: 691 opt: 1682 Z-score: 843.4 bits: 163.9 E(32554): 1.2e-40
Smith-Waterman score: 1682; 71.5% identity (77.2% similar) in 298 aa overlap (1-288:1-278)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
::::::::::::.:::::::::::::::::::::::: :::::::.:::::::
CCDS31 MGCCGCSGGCGSSCGGCGSGCGGCGSGCGGCGSGCGGS-------GSSCCVPVCCCKPVC
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 CCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
: ::.::::::: ::: :: ::::::: :::: :::::::::::::::::::::::
CCDS31 CRVPTCSCSSCG-----KGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGGSKGG
60 70 80 90 100
130 140 150 160 170
pF1KE0 CGSCGGSKGGCVS-CGGSKGGCG---------SCGGSKGGCVSCGGSKGGCGSCGGSKGG
::::::::::: : ::: ..: : .: ::: :::::::: :::.
CCDS31 CGSCGGSKGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCG--KGGCGSCGCSKGA
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE0 CGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGC
:::::::::::::::: :::::::: :. .: . : .::::.: :: :: :.:
CCDS31 CGSCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGC---GGCGSGCGVPVCC---CSCSSC
170 180 190 200 210 220
240 250 260 270 280
pF1KE0 GSSCCQSSCCKPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
:: ... : : : ::::::: ::::::::::::::.::::::::::::::::::
CCDS31 GSCAGSKGGCGSSCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPVCCQCKI
230 240 250 260 270
>>CCDS41684.1 10 gene_id:387273|Hs108|chr11 (202 aa)
initn: 2620 init1: 1123 opt: 1243 Z-score: 633.4 bits: 124.6 E(32554): 5.9e-29
Smith-Waterman score: 1500; 67.7% identity (68.8% similar) in 288 aa overlap (1-288:1-202)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
:::::::::::::::::::::::::::::: :::::: ::::::::.:::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGG-------CGSSCCVPVCCCKPVC
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 CCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
::::::::::::::::::: ::::::::::::::::::::
CCDS41 CCVPACSCSSCGSCGGSKGD--------------------CGSCGGSKGGCGSCGGSKGG
60 70 80 90
130 140 150 160 170 180
pF1KE0 CGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
::::::::::: :::::::::::::::::::
CCDS41 CGSCGGSKGGC------------------------------GSCGGSKGGCGSCGGSKGG
100 110 120
190 200 210 220 230 240
pF1KE0 CGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCC
:::::::::::::::::::.::::::::::::: :::::::.::: ::::::
CCDS41 CGSCGGSKGGCGSCGCSQCNCCKPCCCSSGCGS-CCQSSCCNPCC---------CQSSCC
130 140 150 160 170
250 260 270 280
pF1KE0 KPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
: ::::::::::: :::::: :::::::::
CCDS41 VPVCCQSSCCKPCC---------CQSSCC----------VPVCCQCKI
180 190 200
>>CCDS41591.1 3 gene_id:387266|Hs108|chr11 (238 aa)
initn: 2021 init1: 899 opt: 1193 Z-score: 608.6 bits: 120.3 E(32554): 1.4e-27
Smith-Waterman score: 1481; 69.1% identity (75.9% similar) in 278 aa overlap (13-288:2-238)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
::.::. :::::.::::::.::::::: :::::.::::.:::::::
CCDS41 MGCSGCS---GGCGSSCGGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVC
10 20 30 40
70 80 90 100 110 120
pF1KE0 CCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
:::::::::::::::::: : :: :::: ::::::::::::::::
CCDS41 CCVPACSCSSCGSCGGSK---GVCG-------SCGGCKGGCGSCGGSKGGCGS-------
50 60 70 80
130 140 150 160 170
pF1KE0 CGSCGGSKGGCVS-CGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKG
:: :: : .: .::::::::: : ::::::::::: :..:. :
CCDS41 --SC------CVPVCCSS--SCGSCGGSKGVCGFRGGSKGGCGSCG-----CSQCSCYKP
90 100 110 120 130
180 190 200 210 220 230
pF1KE0 GCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCC-QSSCCKPCCSSSGCGSSCCQSS
: :. .:::: .: : ::::: : .:.: . :: ::::::::: ::::::::::::
CCDS41 CC--CS---SGCGS-SCCQSSCCKPSCSQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSS
140 150 160 170 180
240 250 260 270 280
pF1KE0 CCKPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
:::: : ::::::::: ::::::::::::::.:: ::::::::.::::::
CCDS41 CCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQCKI
190 200 210 220 230
>>CCDS41592.1 5 gene_id:439915|Hs108|chr11 (237 aa)
initn: 1573 init1: 910 opt: 1189 Z-score: 606.7 bits: 119.9 E(32554): 1.8e-27
Smith-Waterman score: 1629; 69.1% identity (71.1% similar) in 301 aa overlap (1-288:1-237)
10 20 30 40
pF1KE0 MGCCGCSGGCGSGCGG-------CGSGCGGCGSGCGGCGSGCGGCG------SGCGGCGS
:::::::::::::::: ::::::::::::::::::::::: .:::::::
CCDS41 MGCCGCSGGCGSGCGGRGSGCGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 SCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGS
.::::.:::::.:::::::::::::
CCDS41 GCCVPVCCCKPMCCCVPACSCSSCG-----------------------------------
70 80
110 120 130 140 150 160
pF1KE0 KGGCGSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGS
::::::::::: :::::: :::.::::::::::: ::::::
CCDS41 ----------KGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGC----------GSCGGS
90 100 110 120
170 180 190 200 210 220
pF1KE0 KGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSS
:::::::::::::::::::::::::: :::: ::::::::::::::::::::::::
CCDS41 KGGCGSCGGSKGGCGSCGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCCQSSCCKP----
130 140 150 160 170 180
230 240 250 260 270 280
pF1KE0 SGCGSSCCQSSCCKPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCK
:::::::::::::::::::: :::::::::::: .::: :::::::::::::
CCDS41 -----YCCQSSCCKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKPCCCQSSCCVPVCCQCK
190 200 210 220 230
pF1KE0 I
:
CCDS41 I
>>CCDS41683.1 8 gene_id:57830|Hs108|chr11 (187 aa)
initn: 1818 init1: 961 opt: 1030 Z-score: 531.1 bits: 105.6 E(32554): 2.9e-23
Smith-Waterman score: 1230; 59.5% identity (60.6% similar) in 279 aa overlap (20-288:2-187)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
:: ::. ::::::::::::::::::::::::::::::::
CCDS41 MGCCGCS---GGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
10 20 30
70 80 90 100 110 120
pF1KE0 CCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
:::::::::::::::::::: :::::::: :
CCDS41 CCVPACSCSSCGSCGGSKGGRGSCGGSKGDC-----------------------------
40 50 60 70
130 140 150 160 170 180
pF1KE0 CGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
CCDS41 ------------------------------------------------------------
190 200 210 220 230
pF1KE0 CGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCS----------SSGC
:::::::::::::::::::: :::::::::::::::::::::::: ::::
CCDS41 -GSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCSCSSGC
80 90 100 110 120
240 250 260 270 280
pF1KE0 GSSCCQSSCCKPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
:::::::::::: : ::::::::: ::::::::::::::.:::::::::::.::::::
CCDS41 GSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVPICCQCKI
130 140 150 160 170 180
>>CCDS53677.1 9 gene_id:3846|Hs108|chr11 (169 aa)
initn: 1767 init1: 822 opt: 953 Z-score: 494.5 bits: 98.6 E(32554): 3.2e-21
Smith-Waterman score: 1012; 49.3% identity (52.8% similar) in 288 aa overlap (1-288:1-169)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
::::::::::::.:::: :.: :.::::: ::: :::.:. ::::::
CCDS53 MGCCGCSGGCGSSCGGCDSSC--------------GSCGSGCRGCGPSCCAPVYCCKPVC
10 20 30 40
70 80 90 100 110 120
pF1KE0 CCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
::::::::::::
CCDS53 CCVPACSCSSCG------------------------------------------------
50
130 140 150 160 170 180
pF1KE0 CGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
: :
CCDS53 ---------------------------------------------------------KRG
60
190 200 210 220 230 240
pF1KE0 CGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCC
::::::::::::::::::::::::::::::::::::: ::::: ::. .: . ::.::
CCDS53 CGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQCSCCKPYCSQCSCCKPCCSSSGR
70 80 90 100 110 120
250 260 270 280
pF1KE0 KPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
::::::::::::::::::::::::::.:::::: :::::: ::::
CCDS53 GSSCCQSSCCKPCCSSSGCGSSCCQSSCCKPCCSQSRCCVPVCYQCKI
130 140 150 160
>>CCDS41682.1 7 gene_id:440050|Hs108|chr11 (165 aa)
initn: 1575 init1: 803 opt: 892 Z-score: 465.2 bits: 93.2 E(32554): 1.4e-19
Smith-Waterman score: 1165; 55.9% identity (56.2% similar) in 288 aa overlap (1-288:1-165)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
::::::: ::::::::::::: :::::::::::::::::.:::::::
CCDS41 MGCCGCSEGCGSGCGGCGSGC--------------GGCGSGCGGCGSSCCVPVCCCKPVC
10 20 30 40
70 80 90 100 110 120
pF1KE0 CCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
::::::::::::::::::::
CCDS41 CCVPACSCSSCGSCGGSKGG----------------------------------------
50 60
130 140 150 160 170 180
pF1KE0 CGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
::::::::::
CCDS41 --------------------------------------------------CGSCGGSKGG
70
190 200 210 220 230 240
pF1KE0 CGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCC
::::::::::::::::::::: :::::::::::::::::::::::
CCDS41 CGSCGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPCC---------------
80 90 100 110 120
250 260 270 280
pF1KE0 KPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
:::::::::: :::::::::::::::::::::::::::::::::
CCDS41 ----CQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
130 140 150 160
>>CCDS31331.1 2 gene_id:440021|Hs108|chr11 (177 aa)
initn: 2085 init1: 785 opt: 850 Z-score: 444.7 bits: 89.5 E(32554): 1.9e-18
Smith-Waterman score: 1110; 53.6% identity (55.3% similar) in 295 aa overlap (1-288:1-177)
10 20 30 40 50
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSC--C-----VPI
::::::: :::::::::::.:::::::::::::: ::::::::::.::: : ::.
CCDS31 MGCCGCSRGCGSGCGGCGSSCGGCGSGCGGCGSGRGGCGSGCGGCSSSCGGCGSRCYVPV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 CCCKPVCCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGS
::::::: ::::::.:::::::::::
CCDS31 CCCKPVCSWVPACSCTSCGSCGGSKGG---------------------------------
70 80
120 130 140 150 160 170
pF1KE0 CGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGS
:::
CCDS31 ---------------------------------------------------------CGS
90
180 190 200 210 220 230
pF1KE0 CGGSKGGCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSS
::::::::::::::::::::::::: ::::::::::::::::::::::::::
CCDS31 CGGSKGGCGSCGGSKGGCGSCGCSQSSCCKPCCCSSGCGSSCCQSSCCKPCC--------
100 110 120 130 140
240 250 260 270 280
pF1KE0 CCQSSCCKPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
:::::: : ::::::::::: :::.:: :::::::::
CCDS31 -CQSSCCVPVCCQSSCCKPCC---------CQSNCC----------VPVCCQCKI
150 160 170
>>CCDS31332.1 6 gene_id:440023|Hs108|chr11 (129 aa)
initn: 1275 init1: 678 opt: 705 Z-score: 376.2 bits: 76.4 E(32554): 1.2e-14
Smith-Waterman score: 823; 51.7% identity (53.0% similar) in 232 aa overlap (20-251:2-128)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
:: ::. ::::::::::::::::::::::::::::::::
CCDS31 MGCCGCS---GGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
10 20 30
70 80 90 100 110 120
pF1KE0 CCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
::::::::.:::::::::: :
CCDS31 CCVPACSCTSCGSCGGSKG-----------C-----------------------------
40 50
130 140 150 160 170 180
pF1KE0 CGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
::::::::::
CCDS31 --------------------------------------------------CGSCGGSKGG
60
190 200 210 220 230 240
pF1KE0 CGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCC
::::::::::::::::::::::::: :::::::::::::::::::: :.:::
CCDS31 CGSCGGSKGGCGSCGCSQCSCCKPCYCSSGCGSSCCQSSCCKPCCS---------QASCC
70 80 90 100 110 120
250 260 270 280
pF1KE0 KPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
: ::: ::
CCDS31 VPICCQ---CKI
>>CCDS41685.1 11 gene_id:440051|Hs108|chr11 (156 aa)
initn: 1569 init1: 660 opt: 697 Z-score: 371.6 bits: 75.8 E(32554): 2.2e-14
Smith-Waterman score: 985; 50.3% identity (51.4% similar) in 288 aa overlap (1-288:1-156)
10 20 30 40 50 60
pF1KE0 MGCCGCSGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSGCGGCGSSCCVPICCCKPVC
:::::::::::::::::::: :::::::::::::::::::::::::
CCDS41 MGCCGCSGGCGSGCGGCGSGS--------------GGCGSGCGGCGSSCCVPICCCKPVC
10 20 30 40
70 80 90 100 110 120
pF1KE0 CCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
::::::::::::::::::::
CCDS41 CCVPACSCSSCGSCGGSKGG----------------------------------------
50 60
130 140 150 160 170 180
pF1KE0 CGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG
CCDS41 ------------------------------------------------------------
190 200 210 220 230 240
pF1KE0 CGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCC
:::::.:::::::::::: .:::::: :::::: :::::: :::: ::::
CCDS41 CGSCGSSKGGCGSCGCSQSNCCKPCCSSSGCGSFCCQSSCSKPCC---------CQSS--
70 80 90 100 110
250 260 270 280
pF1KE0 KPYCCQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQCKI
::::::::::: : :::::::: .::: ::::::::::::::
CCDS41 ---CCQSSCCKPCC----CQSSCCQSSCFKPCCCQSSCCVPVCCQCKI
120 130 140 150
288 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:54:16 2016 done: Wed Nov 2 22:54:16 2016
Total Scan time: 1.980 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]