FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0546, 297 aa
  1>>>pF1KE0546 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4614+/-0.000747; mu= 14.5015+/- 0.045
 mean_var=60.0590+/-12.116, 0's: 0 Z-trim(108.6): 6  B-trim: 438 in 1/50
 Lambda= 0.165495
 statistics sampled from 10299 (10303) to 10299 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.316), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS13938.1 TST gene_id:7263|Hs108|chr22           ( 297) 2032 493.2 9.8e-140
CCDS13939.1 MPST gene_id:4357|Hs108|chr22          ( 297) 1278 313.2 1.5e-85
CCDS46703.1 MPST gene_id:4357|Hs108|chr22          ( 317) 1278 313.2 1.6e-85


>>CCDS13938.1 TST gene_id:7263|Hs108|chr22                (297 aa)
 initn: 2032 init1: 2032 opt: 2032  Z-score: 2622.1  bits: 493.2 E(32554): 9.8e-140
Smith-Waterman score: 2032; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KE0 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGTREARKEYLERHVPGASFFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGTREARKEYLERHVPGASFFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 HRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVDL
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KE0 SQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSEKA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSEKA
              250       260       270       280       290       

>>CCDS13939.1 MPST gene_id:4357|Hs108|chr22               (297 aa)
 initn: 1180 init1: 691 opt: 1278  Z-score: 1649.2  bits: 313.2 E(32554): 1.5e-85
Smith-Waterman score: 1278; 59.5% identity (83.1% similar) in 296 aa overlap (1-295:1-295)

               10        20        30        40         50         
pF1KE0 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGT-REARKEYLERHVPGASFF
       :.   : :::::..:.::..:. . :  :..:::::: :   :.::.:. :::.:::.::
CCDS13 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 DIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVF
       ::..: : .:::. :::.   ::::.::::..  ::::.::.   : . :::::::::.:
CCDS13 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 GHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQL
       ::..::.:.::.:.::... :..:  :.: :: :.: :: ...::::.. :::::.:::.
CCDS13 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 VDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVD
       ::::. ::: ::::::   :.. ::: :.::.:: :::...:.::.:::.: ::: ::::
CCDS13 VDSRATGRFRGTEPEPRD-GIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD
              190        200       210       220       230         

     240       250       260       270       280       290       
pF1KE0 LSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSEKA
       ::.::.::: .:::::::::.::::::::: .::::: ::. :: ::. .:.:...  
CCDS13 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
     240       250       260       270       280       290       

>>CCDS46703.1 MPST gene_id:4357|Hs108|chr22               (317 aa)
 initn: 1180 init1: 691 opt: 1278  Z-score: 1648.8  bits: 313.2 E(32554): 1.6e-85
Smith-Waterman score: 1278; 59.5% identity (83.1% similar) in 296 aa overlap (1-295:21-315)

                                   10        20        30        40
pF1KE0                     MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPG
                           :.   : :::::..:.::..:. . :  :..:::::: : 
CCDS46 MAEPGSRESETRARSPSVAAMASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPK
               10        20        30        40        50        60

                50        60        70        80        90         
pF1KE0 T-REARKEYLERHVPGASFFDIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVY
         :.::.:. :::.:::.::::..: : .:::. :::.   ::::.::::..  ::::.:
CCDS46 LGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIY
               70        80        90       100       110       120

     100       110       120       130       140       150         
pF1KE0 DGEHLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDR
       :.   : . :::::::::.:::..::.:.::.:.::... :..:  :.: :: :.: :: 
CCDS46 DASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDP
              130       140       150       160       170       180

     160       170       180       190       200       210         
pF1KE0 SLLKTYEQVLENLESKRFQLVDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTE
       ...::::.. :::::.:::.::::. ::: ::::::   :.. ::: :.::.:: :::..
CCDS46 AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRD-GIEPGHIPGTVNIPFTDFLSQ
              190       200       210        220       230         

     220       230       240       250       260       270         
pF1KE0 DGFEKGPEELRALFQTKKVDLSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEW
       .:.::.:::.: ::: ::::::.::.::: .:::::::::.::::::::: .::::: ::
CCDS46 EGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW
     240       250       260       270       280       290         

     280       290       
pF1KE0 FRRAPPESRVSQGKSEKA
       . :: ::. .:.:...  
CCDS46 YMRARPEDVISEGRGKTH
     300       310       




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:02:31 2016 done: Thu Nov  3 00:02:31 2016
 Total Scan time:  2.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]