FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0545, 377 aa
  1>>>pF1KE0545 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5820+/-0.000896; mu= 14.9554+/- 0.054
 mean_var=61.6691+/-12.620, 0's: 0 Z-trim(105.3): 19  B-trim: 457 in 1/47
 Lambda= 0.163320
 statistics sampled from 8357 (8361) to 8357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.257), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS13839.1 TPST2 gene_id:8459|Hs108|chr22         ( 377) 2502 598.1 4.1e-171
CCDS5533.1 TPST1 gene_id:8460|Hs108|chr7           ( 370) 1625 391.5 6.5e-109


>>CCDS13839.1 TPST2 gene_id:8459|Hs108|chr22              (377 aa)
 initn: 2502 init1: 2502 opt: 2502  Z-score: 3185.4  bits: 598.1 E(32554): 4.1e-171
Smith-Waterman score: 2502; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KE0 MRLSVRRVLLAAGCALVLVLAVQLGQQVLECRAVLAGLRSPRGAMRPEQEELVMVGTNHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRLSVRRVLLAAGCALVLVLAVQLGQQVLECRAVLAGLRSPRGAMRPEQEELVMVGTNHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EYRYGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAWSKSGREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EYRYGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAWSKSGREK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LRLDEAGVTDEVLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFPNSKFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRLDEAGVTDEVLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFPNSKFLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGKEKCLPVYYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGKEKCLPVYYEQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LVLHPRRSLKLILDFLGIAWSDAVLHHEDLIGKPGGVSLSKIERSTDQVIKPVNLEALSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVLHPRRSLKLILDFLGIAWSDAVLHHEDLIGKPGGVSLSKIERSTDQVIKPVNLEALSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 WTGHIPGDVVRDMAQIAPMLAQLGYDPYANPPNYGNPDPFVINNTQRVLKGDYKTPANLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WTGHIPGDVVRDMAQIAPMLAQLGYDPYANPPNYGNPDPFVINNTQRVLKGDYKTPANLK
              310       320       330       340       350       360

              370       
pF1KE0 GYFQVNQNSTSSHLGSS
       :::::::::::::::::
CCDS13 GYFQVNQNSTSSHLGSS
              370       

>>CCDS5533.1 TPST1 gene_id:8460|Hs108|chr7                (370 aa)
 initn: 1635 init1: 1597 opt: 1625  Z-score: 2068.8  bits: 391.5 E(32554): 6.5e-109
Smith-Waterman score: 1625; 65.9% identity (84.6% similar) in 369 aa overlap (5-367:5-368)

               10        20        30              40        50    
pF1KE0 MRLSVRRVLLAAGCALVLVLAVQLGQQVLEC------RAVLAGLRSPRGAMRPEQEELVM
           ... :: :  ..  : .  :::...::      :.  . :.: : ..:   .    
CCDS55 MVGKLKQNLLLACLVISSVTVFYLGQHAMECHHRIEERSQPVKLESTRTTVRTGLD----
               10        20        30        40        50          

           60        70        80        90       100       110    
pF1KE0 VGTNHVEYRYGKAMPLIFVGGVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAWS
       . .:.. . : : :::::.:::::::::::::::::::..:::::::.:::.::..: ::
CCDS55 LKANKT-FAYHKDMPLIFIGGVPRSGTTLMRAMLDAHPDIRCGEETRVIPRILALKQMWS
         60         70        80        90       100       110     

          120       130       140       150       160       170    
pF1KE0 KSGREKLRLDEAGVTDEVLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFP
       .:..::.:::::::::::::.:::::.::.:.::::::  :::::::.::: .:::::::
CCDS55 RSSKEKIRLDEAGVTDEVLDSAMQAFLLEIIVKHGEPAPYLCNKDPFALKSLTYLSRLFP
         120       130       140       150       160       170     

          180       190       200       210       220       230    
pF1KE0 NSKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGKEKCL
       :.:::::::::::::::::.::::::::::.::::::::::.:::.:: :::::: .::.
CCDS55 NAKFLLMVRDGRASVHSMISRKVTIAGFDLNSYRDCLTKWNRAIETMYNQCMEVGYKKCM
         180       190       200       210       220       230     

          240       250       260       270       280       290    
pF1KE0 PVYYEQLVLHPRRSLKLILDFLGIAWSDAVLHHEDLIGKPGGVSLSKIERSTDQVIKPVN
        :.::::::::.: .. .: :: : :. .:::::..::: :::::::.::::::::::::
CCDS55 LVHYEQLVLHPERWMRTLLKFLQIPWNHSVLHHEEMIGKAGGVSLSKVERSTDQVIKPVN
         240       250       260       270       280       290     

          300       310       320       330       340       350    
pF1KE0 LEALSKWTGHIPGDVVRDMAQIAPMLAQLGYDPYANPPNYGNPDPFVINNTQRVLKGDYK
       . :::::.:.:: ::..::: ::::::.:::::::::::::.::: .:.::.:: ::...
CCDS55 VGALSKWVGKIPPDVLQDMAVIAPMLAKLGYDPYANPPNYGKPDPKIIENTRRVYKGEFQ
         300       310       320       330       340       350     

          360       370       
pF1KE0 TPANLKGYFQVNQNSTSSHLGSS
        :  ::   :..:          
CCDS55 LPDFLKEKPQTEQVE        
         360       370        




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:03:36 2016 done: Thu Nov  3 00:03:37 2016
 Total Scan time:  2.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]