Result of FASTA (ccds) for
pF1KE0544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0544, 427 aa
1>>>pF1KE0544 427 - 427 aa - 427 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7551+/-0.000886; mu= 14.1493+/- 0.053
mean_var=62.7989+/-12.417, 0's: 0 Z-trim(105.5): 18 B-trim: 0 in 0/49
Lambda= 0.161845
statistics sampled from 8446 (8452) to 8446 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.26), width: 16
Scan time: 2.620
The best scores are: opt bits E(32554)
CCDS13881.1 TCN2 gene_id:6948|Hs108|chr22 ( 427) 2837 671.2 5.2e-193
CCDS54519.1 TCN2 gene_id:6948|Hs108|chr22 ( 400) 1877 447.1 1.5e-125
CCDS7978.1 TCN1 gene_id:6947|Hs108|chr11 ( 433) 452 114.4 2.3e-25
CCDS7977.1 GIF gene_id:2694|Hs108|chr11 ( 417) 261 69.8 5.8e-12
>>CCDS13881.1 TCN2 gene_id:6948|Hs108|chr22 (427 aa)
initn: 2837 init1: 2837 opt: 2837 Z-score: 3578.7 bits: 671.2 E(32554): 5.2e-193
Smith-Waterman score: 2837; 99.8% identity (99.8% similar) in 427 aa overlap (1-427:1-427)
10 20 30 40 50 60
pF1KE0 MRHLGAFLFLLGVLGALTEMCEIPEMDSHLVEKLGQHLLPWMDRLSLEHLNPSIYVGLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRHLGAFLFLLGVLGALTEMCEIPEMDSHLVEKLGQHLLPWMDRLSLEHLNPSIYVGLRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSLQAGTKEDLYLHSLKLGYQQCLLGSAFSEDDGDCQGKPSMGQLALYLLALRANCEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SSLQAGTKEDLYLHSLKLGYQQCLLGSAFSEDDGDCQGKPSMGQLALYLLALRANCEFVR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GHKGDRLVSQLKWFLEDEKRAIGHDHKGHPHTSYYQYGLGILALCLHQKRVHDSVVDKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GHKGDRLVSQLKWFLEDEKRAIGHDHKGHPHTSYYQYGLGILALCLHQKRVHDSVVDKLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 YAVEPFHQGHHSVDTAAMAGLAFTCLKRSNFNPGRRQRITMAIRTVREEILKAQTPEGHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YAVEPFHQGHHSVDTAAMAGLAFTCLKRSNFNPGRRQRITMAIRTVREEILKAQTPEGHF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 GNVYSTPLALQFLMTSPMPGAELGTACLKARVALLASLQDGAFQNALMISQLLPVLNHKT
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS13 GNVYSTPLALQFLMTSPMRGAELGTACLKARVALLASLQDGAFQNALMISQLLPVLNHKT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 YIDLIFPDCLAPRVMLEPAAETIPQTQEIISVTLQVLSLLPPYRQSISVLAGSTVEDVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YIDLIFPDCLAPRVMLEPAAETIPQTQEIISVTLQVLSLLPPYRQSISVLAGSTVEDVLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 KAHELGGFTYETQASLSGPYLTSVMGKAAGEREFWQLLRDPNTPLLQGIADYRPKDGETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KAHELGGFTYETQASLSGPYLTSVMGKAAGEREFWQLLRDPNTPLLQGIADYRPKDGETI
370 380 390 400 410 420
pF1KE0 ELRLVSW
:::::::
CCDS13 ELRLVSW
>>CCDS54519.1 TCN2 gene_id:6948|Hs108|chr22 (400 aa)
initn: 1874 init1: 1874 opt: 1877 Z-score: 2367.7 bits: 447.1 E(32554): 1.5e-125
Smith-Waterman score: 2580; 93.4% identity (93.4% similar) in 427 aa overlap (1-427:1-400)
10 20 30 40 50 60
pF1KE0 MRHLGAFLFLLGVLGALTEMCEIPEMDSHLVEKLGQHLLPWMDRLSLEHLNPSIYVGLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRHLGAFLFLLGVLGALTEMCEIPEMDSHLVEKLGQHLLPWMDRLSLEHLNPSIYVGLRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSLQAGTKEDLYLHSLKLGYQQCLLGSAFSEDDGDCQGKPSMGQLALYLLALRANCEFVR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SSLQAGTKEDLYLHSLKLGYQQCLLGSAFSEDDGDCQGKPSMGQLALYLLALRAN-----
70 80 90 100 110
130 140 150 160 170 180
pF1KE0 GHKGDRLVSQLKWFLEDEKRAIGHDHKGHPHTSYYQYGLGILALCLHQKRVHDSVVDKLL
: :::::::::::::::::::::::::::::::::::::
CCDS54 ------------W----------HDHKGHPHTSYYQYGLGILALCLHQKRVHDSVVDKLL
120 130 140 150
190 200 210 220 230 240
pF1KE0 YAVEPFHQGHHSVDTAAMAGLAFTCLKRSNFNPGRRQRITMAIRTVREEILKAQTPEGHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YAVEPFHQGHHSVDTAAMAGLAFTCLKRSNFNPGRRQRITMAIRTVREEILKAQTPEGHF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE0 GNVYSTPLALQFLMTSPMPGAELGTACLKARVALLASLQDGAFQNALMISQLLPVLNHKT
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS54 GNVYSTPLALQFLMTSPMRGAELGTACLKARVALLASLQDGAFQNALMISQLLPVLNHKT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE0 YIDLIFPDCLAPRVMLEPAAETIPQTQEIISVTLQVLSLLPPYRQSISVLAGSTVEDVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YIDLIFPDCLAPRVMLEPAAETIPQTQEIISVTLQVLSLLPPYRQSISVLAGSTVEDVLK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE0 KAHELGGFTYETQASLSGPYLTSVMGKAAGEREFWQLLRDPNTPLLQGIADYRPKDGETI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KAHELGGFTYETQASLSGPYLTSVMGKAAGEREFWQLLRDPNTPLLQGIADYRPKDGETI
340 350 360 370 380 390
pF1KE0 ELRLVSW
:::::::
CCDS54 ELRLVSW
400
>>CCDS7978.1 TCN1 gene_id:6947|Hs108|chr11 (433 aa)
initn: 389 init1: 132 opt: 452 Z-score: 568.9 bits: 114.4 E(32554): 2.3e-25
Smith-Waterman score: 484; 29.4% identity (59.0% similar) in 446 aa overlap (4-423:10-429)
10 20 30 40 50
pF1KE0 MRHLGAFLFLLGVLGALTEMCEIPEMDSHLVEKLGQHLLPWMDRLSLEHLNPSI
.: .:: . . . : :.::. : . .. : . .. . .: .
CCDS79 MRQSHQLPLVGLLLFSF-IPSQLCEICEVSEENYIRLKPLLNTMIQSNYNRGTSAVN--V
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 YVGLRLSSLQAGTKEDLYLHSLKLGYQQCLLGSAFSEDDGDCQGKPSMGQLALYLLAL--
..:.: ..: : . .....: . .. : .: : :.::: .:::
CCDS79 VLSLKLVGIQIQTLMQKMIQQIKYNVKSRL---------SDV----SSGELALIILALGV
60 70 80 90 100
120 130 140 150 160
pF1KE0 --RANCEFVRG-HKGDRLVSQLKWFLEDEKRAIGHDHKGHPHTSYYQYGLGILALCLHQK
:. ... : :.: .... .:. . :.: : :.::: .: .::::: .
CCDS79 CRNAEENLIYDYHLIDKLENKFQAEIENMEA-----HNGTPLTNYYQLSLDVLALCLFNG
110 120 130 140 150
170 180 190 200 210 220
pF1KE0 RVHDS-VVDKLLYAVEPFHQGHH-SVDTAAMAGLAFTCLKRSNFN------PGRRQRITM
. ::... . .. : . ::::.::: ::.::.:.: .: : . :..
CCDS79 NYSTAEVVNHFTPENKNYYFGSQFSVDTGAMAVLALTCVKKSLINGQIKADEGSLKNISI
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE0 AIRTVREEILKAQTPEGHFGNVYSTPLALQFLMTSPMPGAELGTACLKARVALLASLQDG
... :.::. . .: .::..:: :.: :..: : : .. ..:. ...:
CCDS79 YTKSLVEKILSEKKENGLIGNTFSTGEAMQALFVSSDYYNENDWNCQQTLNTVLTEISQG
220 230 240 250 260 270
290 300 310 320 330
pF1KE0 AFQNALMISQLLPVLNHKTYIDLIFPD--CLAPRVML-----EPAAETIPQTQEIISVTL
::.: .:.::.: ::..: : : :.. . :: . : :..: :::.
CCDS79 AFSNPNAAAQVLPALMGKTFLD-INKDSSCVSASGNFNISADEPITVTPPDSQSYISVNY
280 290 300 310 320 330
340 350 360 370 380 390
pF1KE0 QVLSLLPPYRQSISVLAGSTVEDVLKKAHELG----GFTYETQASLSGPYLTSVMGKAAG
.: . : ...:: ::. .:..::.... :::.: .. :::.: ..: :.
CCDS79 SV-RINETYFTNVTVLNGSVFLSVMEKAQKMNDTIFGFTMEERS--WGPYITCIQGLCAN
340 350 360 370 380 390
400 410 420
pF1KE0 --EREFWQLLRDPNTPLLQGIADYRPKDGETIELRLVSW
.: .:.:: . . :: :: ..: ..::..:.:
CCDS79 NNDRTYWELL-SGGEPLSQGAGSYVVRNGENLEVRWSKY
400 410 420 430
>>CCDS7977.1 GIF gene_id:2694|Hs108|chr11 (417 aa)
initn: 193 init1: 65 opt: 261 Z-score: 328.2 bits: 69.8 E(32554): 5.8e-12
Smith-Waterman score: 405; 28.2% identity (56.4% similar) in 440 aa overlap (8-420:6-410)
10 20 30 40 50
pF1KE0 MRHLGAFLFLLGVL----GALTEM---CEIPEMDSHLVEKLGQHLLPWMDRLSLEHLNPS
:.::..: :. :. : .: . ::. : ..: . : . :::
CCDS79 MAWFALYLLSLLWATAGTSTQTQSSCSVPSAQEPLVN--GIQVLMENSVTSSAYPNPS
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 IYVGLRLSSLQAGTKEDLYLHSLKLGYQQCLLGSAFSEDDGDCQGKPSMGQLALYLLALR
: ... : ::. ..:: :. : . .: :..: ..:::.: ..::
CCDS79 ILIAMNL----AGA------YNLKA--QKLLTYQLMSSDNNDL----TIGQLGLTIMALT
60 70 80 90 100
120 130 140 150 160 170
pF1KE0 ANCEFVRGHKGDRLVSQLKWFLEDEKRAIGHDHKGHPHTSYYQYGLGILALCLHQKRVHD
..:. ::. :: :. .:. . . . ...: .:.::::: .....
CCDS79 SSCR----DPGDK-VSILQRQMEN----WAPSSPNAEASAFYGPSLAILALCQKNSEATL
110 120 130 140 150
180 190 200 210 220
pF1KE0 SVVDK----LLYAVEPFHQGHHSVDTAAMAGLAFTCLKRS---NFNPGRRQRITMAIRTV
.. . :: ::. :::.::: ::.::. . . . : :. . .... .
CCDS79 PIAVRFAKTLLANSSPFN-----VDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDI
160 170 180 190 200
230 240 250 260 270 280
pF1KE0 REEILKAQTPEGHFGNVYSTPLALQFLMTSPMPGAELGTACLKARVALLASLQDGAFQNA
:.: .: .:..::: ::.: : ..: :. . . : :. .: ...: :.:
CCDS79 VEKISMKIKDNGIIGDIYSTGLAMQALSVTPEPSKKEWN-CKKTTDMILNEIKQGKFHNP
210 220 230 240 250 260
290 300 310 320 330
pF1KE0 LMISQLLPVLNHKTYIDLIFPDCLAPRVMLEPAAETIP----QTQEIISVTLQV------
. :.:.:: :. :::.:. : .: ..:. . : . :.: .
CCDS79 MSIAQILPSLKGKTYLDVPQVTC-SPDHEVQPTLPSNPGPGPTSASNITVIYTINNQLRG
270 280 290 300 310 320
340 350 360 370 380 390
pF1KE0 LSLLPPYRQSISVLAGSTVEDVLKKAHELGG-FTYETQASLSGPYLTSV--MGKAAGERE
. :: ..:: .::.. ::..:.. . : .:: . : ..:. ... ....
CCDS79 VELLFNETINVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKT
330 340 350 360 370 380
400 410 420
pF1KE0 FWQLLRDPNTPLLQGIADYRPKDGETIELRLVSW
.::.: ::: .:.::: : . : :
CCDS79 YWQFLSGV-TPLNEGVADYIPFNHEHITANFTQY
390 400 410
427 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:04:58 2016 done: Thu Nov 3 00:04:58 2016
Total Scan time: 2.620 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]