FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0529, 214 aa
  1>>>pF1KE0529 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4883+/-0.00106; mu= 11.6983+/- 0.062
 mean_var=52.3349+/-11.274, 0's: 0 Z-trim(100.5): 37  B-trim: 0 in 0/47
 Lambda= 0.177288
 statistics sampled from 6145 (6155) to 6145 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.532), E-opt: 0.2 (0.189), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS13972.1 KDELR3 gene_id:11015|Hs108|chr22       ( 214) 1387 362.9 8.2e-101
CCDS46705.1 KDELR3 gene_id:11015|Hs108|chr22       ( 220) 1304 341.7 2.1e-94
CCDS5351.1 KDELR2 gene_id:11014|Hs108|chr7         ( 212) 1093 287.8 3.5e-78
CCDS12718.1 KDELR1 gene_id:10945|Hs108|chr19       ( 212) 1054 277.8 3.5e-75
CCDS43550.1 KDELR2 gene_id:11014|Hs108|chr7        ( 186)  548 148.4 2.8e-36


>>CCDS13972.1 KDELR3 gene_id:11015|Hs108|chr22            (214 aa)
 initn: 1387 init1: 1387 opt: 1387  Z-score: 1923.4  bits: 362.9 E(32554): 8.2e-101
Smith-Waterman score: 1387; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
              130       140       150       160       170       180

              190       200       210    
pF1KE0 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLPMPI
       ::::::::::::::::::::::::::::::::::
CCDS13 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLPMPI
              190       200       210    

>>CCDS46705.1 KDELR3 gene_id:11015|Hs108|chr22            (220 aa)
 initn: 1304 init1: 1304 opt: 1304  Z-score: 1808.4  bits: 341.7 E(32554): 2.1e-94
Smith-Waterman score: 1304; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KE0 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
              130       140       150       160       170       180

              190       200       210          
pF1KE0 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLPMPI      
       :::::::::::::::::::::                   
CCDS46 VVSGVVQTIFYCDFFYLYVTKGRSWDDSNADTGLRSYSSI
              190       200       210       220

>>CCDS5351.1 KDELR2 gene_id:11014|Hs108|chr7              (212 aa)
 initn: 1093 init1: 1093 opt: 1093  Z-score: 1517.0  bits: 287.8 E(32554): 3.5e-78
Smith-Waterman score: 1093; 76.8% identity (92.4% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KE0 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
       ::.::. :::::: :...:: :::... : :::::::.:::::::::::::::.:::.::
CCDS53 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
       : :::..: :.:.:::.:: ::. :.:...::::.:::.::: ::::: :..:. :::::
CCDS53 TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
       :::::::::::::::::::::::::::::::::::::::::::.::: :.  :.:.: ::
CCDS53 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA
              130       140       150       160       170       180

              190       200       210    
pF1KE0 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLPMPI
       ::.::::::.::::::::.::::::::::::   
CCDS53 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA  
              190       200       210    

>>CCDS12718.1 KDELR1 gene_id:10945|Hs108|chr19            (212 aa)
 initn: 1054 init1: 1054 opt: 1054  Z-score: 1463.1  bits: 277.8 E(32554): 3.5e-75
Smith-Waterman score: 1054; 73.0% identity (92.9% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KE0 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
       ::.::.:::::::::.:::: :::.:. : :::::::.:::.:::.::::::::.::.::
CCDS12 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
       : ::::.. :...::..::.::. :.:...::::.:::.::.  :.:: :..:: :::::
CCDS12 TCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
       :::::::::::::::::.::::::::::.:::: ::.::.::: ::: ::. :.:.: ::
CCDS12 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
              130       140       150       160       170       180

              190       200       210    
pF1KE0 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLPMPI
       .:.:.:::..::::::::.::::::::::::   
CCDS12 IVAGLVQTVLYCDFFYLYITKVLKGKKLSLPA  
              190       200       210    

>>CCDS43550.1 KDELR2 gene_id:11014|Hs108|chr7             (186 aa)
 initn: 548 init1: 548 opt: 548  Z-score: 764.7  bits: 148.4 E(32554): 2.8e-36
Smith-Waterman score: 548; 67.5% identity (89.7% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KE0 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
       ::.::. :::::: :...:: :::... : :::::::.:::::::::::::::.:::.::
CCDS43 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
       : :::..: :.:.:::.:: ::. :.:...::::.:::.::: ::::: :..:. ::   
CCDS43 TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEYSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
                                                                   
CCDS43 ERSSVCQHKCQRPSPASVLQGARTEFLPQQRHKMLDTENQKLNSFVADSHQWLCKNAEEK
              130       140       150       160       170       180




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:32:48 2016 done: Thu Nov  3 01:32:49 2016
 Total Scan time:  1.860 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]