FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0518, 166 aa
  1>>>pF1KE0518 166 - 166 aa - 166 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7981+/-0.000374; mu= 14.2306+/- 0.023
 mean_var=54.0911+/-11.382, 0's: 0 Z-trim(112.8): 13  B-trim: 290 in 1/51
 Lambda= 0.174386
 statistics sampled from 21877 (21880) to 21877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.257), width:  16
 Scan time:  5.200

The best scores are:                                      opt bits E(85289)
NP_057582 (OMIM: 610235) mitochondrial fission pro ( 166) 1084 280.5 8.5e-76
NP_001003704 (OMIM: 610235) mitochondrial fission  ( 135)  437 117.7 7.1e-27


>>NP_057582 (OMIM: 610235) mitochondrial fission process  (166 aa)
 initn: 1084 init1: 1084 opt: 1084  Z-score: 1481.8  bits: 280.5 E(85289): 8.5e-76
Smith-Waterman score: 1084; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE0 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKAGEVPSPEAGRSARVTVAVVDTFVWQALASVAIPGFTINRVCAASLYVLGTATRWPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KKAGEVPSPEAGRSARVTVAVVDTFVWQALASVAIPGFTINRVCAASLYVLGTATRWPLA
               70        80        90       100       110       120

              130       140       150       160      
pF1KE0 VRKWTTTALGLLTIPIIIHPIDRSVDFLLDSSLRKLYPTVGKPSSS
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VRKWTTTALGLLTIPIIIHPIDRSVDFLLDSSLRKLYPTVGKPSSS
              130       140       150       160      

>>NP_001003704 (OMIM: 610235) mitochondrial fission proc  (135 aa)
 initn: 437 init1: 437 opt: 437  Z-score: 603.4  bits: 117.7 E(85289): 7.1e-27
Smith-Waterman score: 437; 100.0% identity (100.0% similar) in 66 aa overlap (1-66:1-66)

               10        20        30        40        50        60
pF1KE0 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKAGEVPSPEAGRSARVTVAVVDTFVWQALASVAIPGFTINRVCAASLYVLGTATRWPLA
       ::::::                                                      
NP_001 KKAGEVGGFPPGLQPAQALPNSGEAQLLLIILWYLACASASCFMSTSYSCQGMWTPGSLV
               70        80        90       100       110       120




166 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:15:59 2016 done: Thu Nov  3 02:16:00 2016
 Total Scan time:  5.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]