FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0518, 166 aa
  1>>>pF1KE0518 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1369+/-0.000755; mu= 12.2154+/- 0.045
 mean_var=52.2778+/-10.620, 0's: 0 Z-trim(106.8): 20  B-trim: 0 in 0/49
 Lambda= 0.177385
 statistics sampled from 9211 (9218) to 9211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.283), width:  16
 Scan time:  1.470

The best scores are:                                      opt bits E(32554)
CCDS33635.1 MTFP1 gene_id:51537|Hs108|chr22        ( 166) 1084 285.0 1.5e-77
CCDS33634.1 MTFP1 gene_id:51537|Hs108|chr22        ( 135)  437 119.4 8.5e-28


>>CCDS33635.1 MTFP1 gene_id:51537|Hs108|chr22             (166 aa)
 initn: 1084 init1: 1084 opt: 1084  Z-score: 1505.9  bits: 285.0 E(32554): 1.5e-77
Smith-Waterman score: 1084; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE0 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKAGEVPSPEAGRSARVTVAVVDTFVWQALASVAIPGFTINRVCAASLYVLGTATRWPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KKAGEVPSPEAGRSARVTVAVVDTFVWQALASVAIPGFTINRVCAASLYVLGTATRWPLA
               70        80        90       100       110       120

              130       140       150       160      
pF1KE0 VRKWTTTALGLLTIPIIIHPIDRSVDFLLDSSLRKLYPTVGKPSSS
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VRKWTTTALGLLTIPIIIHPIDRSVDFLLDSSLRKLYPTVGKPSSS
              130       140       150       160      

>>CCDS33634.1 MTFP1 gene_id:51537|Hs108|chr22             (135 aa)
 initn: 437 init1: 437 opt: 437  Z-score: 612.5  bits: 119.4 E(32554): 8.5e-28
Smith-Waterman score: 437; 100.0% identity (100.0% similar) in 66 aa overlap (1-66:1-66)

               10        20        30        40        50        60
pF1KE0 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKAGEVPSPEAGRSARVTVAVVDTFVWQALASVAIPGFTINRVCAASLYVLGTATRWPLA
       ::::::                                                      
CCDS33 KKAGEVGGFPPGLQPAQALPNSGEAQLLLIILWYLACASASCFMSTSYSCQGMWTPGSLV
               70        80        90       100       110       120




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:15:59 2016 done: Thu Nov  3 02:15:59 2016
 Total Scan time:  1.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]