FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0517, 309 aa
  1>>>pF1KE0517 309 - 309 aa - 309 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8603+/-0.000785; mu= 2.7630+/- 0.047
 mean_var=248.0775+/-50.359, 0's: 0 Z-trim(117.3): 10  B-trim: 455 in 1/53
 Lambda= 0.081429
 statistics sampled from 17969 (17979) to 17969 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.552), width:  16
 Scan time:  2.050

The best scores are:                                      opt bits E(32554)
CCDS13787.1 THAP7 gene_id:80764|Hs108|chr22        ( 309) 2149 264.4   8e-71


>>CCDS13787.1 THAP7 gene_id:80764|Hs108|chr22             (309 aa)
 initn: 2149 init1: 2149 opt: 2149  Z-score: 1385.0  bits: 264.4 E(32554): 8e-71
Smith-Waterman score: 2149; 99.7% identity (99.7% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KE0 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IYFCSKHFEEDCFELVGISGYHRLKEGAVPTIFESFSKLRRTTKTKGHSYPPGPPEVSRL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS13 IYFCSKHFEEDCFELVGISGYHRLKEGAVPTIFESFSKLRRTTKTKGHSYPPGPAEVSRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RRCRKRCSEGRGPTTPFSPPPPADVTCFPVEEASAPATLPASPAGRLEPGLSSPFSDLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RRCRKRCSEGRGPTTPFSPPPPADVTCFPVEEASAPATLPASPAGRLEPGLSSPFSDLLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PLGAQADEAGCSAQPSPERQPSPLEPRPVSPSAYMLRLPPPAGAYIQNEHSYQVGSALLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PLGAQADEAGCSAQPSPERQPSPLEPRPVSPSAYMLRLPPPAGAYIQNEHSYQVGSALLW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KRRAEAALDALDKAQRQLQACKRREQRLRLRLTKLQQERAREKRAQADARQTLKEHVQDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRRAEAALDALDKAQRQLQACKRREQRLRLRLTKLQQERAREKRAQADARQTLKEHVQDF
              250       260       270       280       290       300

                
pF1KE0 AMQLSSSMA
       :::::::::
CCDS13 AMQLSSSMA
                




309 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:21:31 2016 done: Thu Nov  3 02:21:31 2016
 Total Scan time:  2.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]