FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0512, 285 aa
  1>>>pF1KE0512 285 - 285 aa - 285 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7991+/-0.000332; mu= 18.0577+/- 0.021
 mean_var=65.4684+/-13.614, 0's: 0 Z-trim(115.6): 9  B-trim: 12 in 1/48
 Lambda= 0.158511
 statistics sampled from 26149 (26157) to 26149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.307), width:  16
 Scan time:  5.840

The best scores are:                                      opt bits E(85289)
NP_060054 (OMIM: 606774) inositol oxygenase [Homo  ( 285) 2048 476.9  2e-134
XP_005261982 (OMIM: 606774) PREDICTED: inositol ox ( 239) 1742 406.8  2e-113
XP_011529007 (OMIM: 606774) PREDICTED: inositol ox ( 221)  764 183.1   4e-46


>>NP_060054 (OMIM: 606774) inositol oxygenase [Homo sapi  (285 aa)
 initn: 2048 init1: 2048 opt: 2048  Z-score: 2534.5  bits: 476.9 E(85289): 2e-134
Smith-Waterman score: 2048; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KE0 MKVTVGPDPSLVYRPDVDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MKVTVGPDPSLVYRPDVDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LLHDLGKVLALFGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LLHDLGKVLALFGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDL
              190       200       210       220       230       240

              250       260       270       280     
pF1KE0 AMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW
       :::::::::::::::::::::::::::::::::::::::::::::
NP_060 AMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW
              250       260       270       280     

>>XP_005261982 (OMIM: 606774) PREDICTED: inositol oxygen  (239 aa)
 initn: 1742 init1: 1742 opt: 1742  Z-score: 2157.4  bits: 406.8 E(85289): 2e-113
Smith-Waterman score: 1742; 100.0% identity (100.0% similar) in 239 aa overlap (47-285:1-239)

         20        30        40        50        60        70      
pF1KE0 VDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEA
                                     ::::::::::::::::::::::::::::::
XP_005                               MHTHQTVDFVRSKHAQFGGFSYKKMTVMEA
                                             10        20        30

         80        90       100       110       120       130      
pF1KE0 VDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLALFGEPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVLALFGEPQ
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KE0 WAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDE
              100       110       120       130       140       150

        200       210       220       230       240       250      
pF1KE0 YMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYT
              160       170       180       190       200       210

        260       270       280     
pF1KE0 KCPDLPDVDKLRPYYQGLIDKYCPGILSW
       :::::::::::::::::::::::::::::
XP_005 KCPDLPDVDKLRPYYQGLIDKYCPGILSW
              220       230         

>>XP_011529007 (OMIM: 606774) PREDICTED: inositol oxygen  (221 aa)
 initn: 764 init1: 764 opt: 764  Z-score: 949.1  bits: 183.1 E(85289): 4e-46
Smith-Waterman score: 764; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE0 MKVTVGPDPSLVYRPDVDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKVTVGPDPSLVYRPDVDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
XP_011 AQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKVPNLPCP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LLHDLGKVLALFGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQ
                                                                   
XP_011 SPSQTGSTSSGSCTTWGRSWPCSGSPSGRSSATPSPTSPTAPHGCLSLLSLLSLPSLPSL
              130       140       150       160       170       180




285 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:00:20 2016 done: Thu Nov  3 03:00:21 2016
 Total Scan time:  5.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]