FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0512, 285 aa
  1>>>pF1KE0512 285 - 285 aa - 285 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1598+/-0.000752; mu= 15.9250+/- 0.045
 mean_var=65.2391+/-13.246, 0's: 0 Z-trim(108.7): 7  B-trim: 29 in 2/48
 Lambda= 0.158789
 statistics sampled from 10369 (10373) to 10369 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.319), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS14092.1 MIOX gene_id:55586|Hs108|chr22         ( 285) 2048 477.6 4.4e-135


>>CCDS14092.1 MIOX gene_id:55586|Hs108|chr22              (285 aa)
 initn: 2048 init1: 2048 opt: 2048  Z-score: 2538.7  bits: 477.6 E(32554): 4.4e-135
Smith-Waterman score: 2048; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KE0 MKVTVGPDPSLVYRPDVDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MKVTVGPDPSLVYRPDVDPEVAKDKASFRNYTSGPLLDRVFTTYKLMHTHQTVDFVRSKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LLHDLGKVLALFGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLHDLGKVLALFGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDL
              190       200       210       220       230       240

              250       260       270       280     
pF1KE0 AMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLIDKYCPGILSW
              250       260       270       280     




285 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:00:19 2016 done: Thu Nov  3 03:00:19 2016
 Total Scan time:  1.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]