FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0504, 213 aa
  1>>>pF1KE0504 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9793+/-0.000749; mu= 3.4083+/- 0.045
 mean_var=176.5953+/-34.659, 0's: 0 Z-trim(115.4): 4  B-trim: 18 in 1/52
 Lambda= 0.096513
 statistics sampled from 15973 (15975) to 15973 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.491), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS13955.1 NOL12 gene_id:79159|Hs108|chr22        ( 213) 1372 201.9 2.4e-52


>>CCDS13955.1 NOL12 gene_id:79159|Hs108|chr22             (213 aa)
 initn: 1372 init1: 1372 opt: 1372  Z-score: 1053.2  bits: 201.9 E(32554): 2.4e-52
Smith-Waterman score: 1372; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE0 MGRNKKKKRDGDDRRPRLVLSFDEEKRREYLTGFHKRKVERKKAAIEEIKQRLKEEQRKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGRNKKKKRDGDDRRPRLVLSFDEEKRREYLTGFHKRKVERKKAAIEEIKQRLKEEQRKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 REERHQEYLKMLAEREEALEEADELDRLVTAKTESVQYDHPNHTVTVTTISDLDLSGARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 REERHQEYLKMLAEREEALEEADELDRLVTAKTESVQYDHPNHTVTVTTISDLDLSGARL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LGLTPPEGGAGDRSEEEASSTEKPTKALPRKSRDPLLSQRISSLTASLHAHSRKKVKRKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LGLTPPEGGAGDRSEEEASSTEKPTKALPRKSRDPLLSQRISSLTASLHAHSRKKVKRKH
              130       140       150       160       170       180

              190       200       210   
pF1KE0 PRRAQDSKKPPRAPRTSKAQRRRLTGKARHSGE
       :::::::::::::::::::::::::::::::::
CCDS13 PRRAQDSKKPPRAPRTSKAQRRRLTGKARHSGE
              190       200       210   




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:49:04 2016 done: Thu Nov  3 03:49:05 2016
 Total Scan time:  2.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]