FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0487, 357 aa
  1>>>pF1KE0487 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5236+/-0.000838; mu= 15.1316+/- 0.050
 mean_var=62.5471+/-12.757, 0's: 0 Z-trim(106.2): 9  B-trim: 2 in 1/48
 Lambda= 0.162170
 statistics sampled from 8816 (8820) to 8816 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.271), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS14065.1 FAM118A gene_id:55007|Hs108|chr22      ( 357) 2372 563.5 9.7e-161
CCDS81647.1 FAM118B gene_id:79607|Hs108|chr11      ( 350) 1025 248.3 7.1e-66
CCDS8470.1 FAM118B gene_id:79607|Hs108|chr11       ( 351) 1025 248.3 7.1e-66


>>CCDS14065.1 FAM118A gene_id:55007|Hs108|chr22           (357 aa)
 initn: 2372 init1: 2372 opt: 2372  Z-score: 2999.2  bits: 563.5 E(32554): 9.7e-161
Smith-Waterman score: 2372; 99.4% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KE0 MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LEQHIRSPLVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWAR
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS14 GHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQ
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KE0 DLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS
              310       320       330       340       350       

>>CCDS81647.1 FAM118B gene_id:79607|Hs108|chr11           (350 aa)
 initn: 1065 init1: 639 opt: 1025  Z-score: 1296.2  bits: 248.3 E(32554): 7.1e-66
Smith-Waterman score: 1025; 52.4% identity (81.1% similar) in 296 aa overlap (13-306:26-321)

                            10        20        30        40       
pF1KE0              MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIP
                                .: ::.: ::  :.:.::.::::::.:::::: .:
CCDS81 MASTGSQASDIDEIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KE0 ALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKP
       :: ::.. :.:...:: ....:.  .  .:.. . .:..:. ::::::.:.::::.... 
CCDS81 ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS
               70        80        90       100       110       120

       110       120         130       140       150       160     
pF1KE0 SFFQDCLMEVFDDLEQHIRSP--LVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPME
       .::.:::.:::::::.....    .:::.: ::. ::.:::::.::::: ..  :.: .:
CCDS81 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE
              130       140       150       160       170       180

         170       180       190       200       210       220     
pF1KE0 SLDLKDKTKVLEWARGHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYR
       :::: :. ::::::. . : .::::::.::.: :.:: :.::..: ...:::. .:.::.
CCDS81 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE
              190       200       210       220       230       240

         230       240       250       260       270       280     
pF1KE0 TKSFLFVGCGETLHDQIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKV
       .:::::.::: :. :  :::::: .: .: ::::.::: . . :.: : . .:: .::::
CCDS81 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV
              250       260       270       280       290       300

         290       300       310       320       330       340     
pF1KE0 VSYGDCFDHFPGYVQDLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKK
       .:::: .  .: : . :. .:                                       
CCDS81 ISYGDDYADLPEYFKRLTCEISTRGTSGMVREGQLNGSSAAHSEIRGCST          
              310       320       330       340       350          

>>CCDS8470.1 FAM118B gene_id:79607|Hs108|chr11            (351 aa)
 initn: 1065 init1: 639 opt: 1025  Z-score: 1296.2  bits: 248.3 E(32554): 7.1e-66
Smith-Waterman score: 1025; 52.4% identity (81.1% similar) in 296 aa overlap (13-306:26-321)

                            10        20        30        40       
pF1KE0              MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIP
                                .: ::.: ::  :.:.::.::::::.:::::: .:
CCDS84 MASTGSQASDIDEIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KE0 ALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKP
       :: ::.. :.:...:: ....:.  .  .:.. . .:..:. ::::::.:.::::.... 
CCDS84 ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS
               70        80        90       100       110       120

       110       120         130       140       150       160     
pF1KE0 SFFQDCLMEVFDDLEQHIRSP--LVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPME
       .::.:::.:::::::.....    .:::.: ::. ::.:::::.::::: ..  :.: .:
CCDS84 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE
              130       140       150       160       170       180

         170       180       190       200       210       220     
pF1KE0 SLDLKDKTKVLEWARGHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYR
       :::: :. ::::::. . : .::::::.::.: :.:: :.::..: ...:::. .:.::.
CCDS84 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE
              190       200       210       220       230       240

         230       240       250       260       270       280     
pF1KE0 TKSFLFVGCGETLHDQIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKV
       .:::::.::: :. :  :::::: .: .: ::::.::: . . :.: : . .:: .::::
CCDS84 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV
              250       260       270       280       290       300

         290       300       310       320       330       340     
pF1KE0 VSYGDCFDHFPGYVQDLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKK
       .:::: .  .: : . :. .:                                       
CCDS84 ISYGDDYADLPEYFKRLTCEISTRGTSAGMVREGQLNGSSAAHSEIRGCST         
              310       320       330       340       350          




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:52:06 2016 done: Thu Nov  3 04:52:07 2016
 Total Scan time:  2.380 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]