Result of FASTA (omim) for
pF1KE0470
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0470, 301 aa
1>>>pF1KE0470 301 - 301 aa - 301 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8424+/-0.000366; mu= 18.2574+/- 0.023
mean_var=61.1138+/-12.181, 0's: 0 Z-trim(112.5): 31 B-trim: 0 in 0/50
Lambda= 0.164061
statistics sampled from 21444 (21475) to 21444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.252), width: 16
Scan time: 6.550
The best scores are: opt bits E(85289)
NP_001001996 (OMIM: 300051) neuronal membrane glyc ( 305) 2061 496.2 3.2e-140
XP_016884921 (OMIM: 300051) PREDICTED: neuronal me ( 286) 1965 473.5 2.1e-133
NP_001001995 (OMIM: 300051) neuronal membrane glyc ( 328) 1921 463.1 3.2e-130
XP_011543799 (OMIM: 300051) PREDICTED: neuronal me ( 309) 1825 440.4 2.1e-123
NP_001001994 (OMIM: 300051) neuronal membrane glyc ( 246) 1675 404.8 8.6e-113
NP_005269 (OMIM: 300051) neuronal membrane glycopr ( 265) 1675 404.8 9.2e-113
NP_001305658 (OMIM: 300051) neuronal membrane glyc ( 269) 1535 371.7 8.8e-103
XP_005274546 (OMIM: 300051) PREDICTED: neuronal me ( 288) 1535 371.7 9.3e-103
XP_016884923 (OMIM: 300051) PREDICTED: neuronal me ( 179) 1220 297.0 1.8e-80
XP_016884922 (OMIM: 300051) PREDICTED: neuronal me ( 202) 1080 263.9 1.8e-70
NP_955772 (OMIM: 300401,312080,312920) myelin prot ( 242) 979 240.1 3.3e-63
NP_005268 (OMIM: 601275) neuronal membrane glycopr ( 278) 855 210.8 2.5e-54
NP_963885 (OMIM: 601275) neuronal membrane glycopr ( 278) 855 210.8 2.5e-54
NP_963886 (OMIM: 601275) neuronal membrane glycopr ( 267) 854 210.5 2.9e-54
NP_001248377 (OMIM: 601275) neuronal membrane glyc ( 271) 854 210.5 2.9e-54
XP_011530179 (OMIM: 601275) PREDICTED: neuronal me ( 215) 569 143.0 4.9e-34
XP_006714246 (OMIM: 601275) PREDICTED: neuronal me ( 215) 569 143.0 4.9e-34
XP_016863525 (OMIM: 601275) PREDICTED: neuronal me ( 215) 569 143.0 4.9e-34
NP_000524 (OMIM: 300401,312080,312920) myelin prot ( 277) 496 125.8 9.6e-29
NP_001122306 (OMIM: 300401,312080,312920) myelin p ( 277) 496 125.8 9.6e-29
NP_001291933 (OMIM: 300401,312080,312920) myelin p ( 222) 484 122.9 5.8e-28
NP_001248376 (OMIM: 601275) neuronal membrane glyc ( 243) 331 86.7 4.9e-17
>>NP_001001996 (OMIM: 300051) neuronal membrane glycopro (305 aa)
initn: 2061 init1: 2061 opt: 2061 Z-score: 2638.3 bits: 496.2 E(85289): 3.2e-140
Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:5-305)
10 20 30 40 50
pF1KE0 METAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
250 260 270 280 290 300
300
pF1KE0 CCTKF
:::::
NP_001 CCTKF
>>XP_016884921 (OMIM: 300051) PREDICTED: neuronal membra (286 aa)
initn: 1965 init1: 1965 opt: 1965 Z-score: 2515.9 bits: 473.5 E(85289): 2.1e-133
Smith-Waterman score: 1965; 100.0% identity (100.0% similar) in 285 aa overlap (17-301:2-286)
10 20 30 40 50 60
pF1KE0 METAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFE
::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFE
10 20 30 40
70 80 90 100 110 120
pF1KE0 CCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALLSEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALLSEVI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 QLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 VAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 CGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTK
230 240 250 260 270 280
pF1KE0 F
:
XP_016 F
>>NP_001001995 (OMIM: 300051) neuronal membrane glycopro (328 aa)
initn: 1919 init1: 1919 opt: 1921 Z-score: 2458.8 bits: 463.1 E(85289): 3.2e-130
Smith-Waterman score: 1921; 95.6% identity (97.6% similar) in 294 aa overlap (1-294:5-298)
10 20 30 40 50
pF1KE0 METAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
:::::::::::::::::::::::::::::::::::::::. ..: . :.: :: :.
NP_001 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
250 260 270 280 290 300
300
pF1KE0 CCTKF
NP_001 AYQDIKAKEEQELQDIQSRSKEQLNSYT
310 320
>>XP_011543799 (OMIM: 300051) PREDICTED: neuronal membra (309 aa)
initn: 1823 init1: 1823 opt: 1825 Z-score: 2336.4 bits: 440.4 E(85289): 2.1e-123
Smith-Waterman score: 1825; 95.3% identity (97.5% similar) in 278 aa overlap (17-294:2-279)
10 20 30 40 50 60
pF1KE0 METAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFE
::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFE
10 20 30 40
70 80 90 100 110 120
pF1KE0 CCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALLSEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALLSEVI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 QLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 VAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 CGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTK
:::::::::::::::::::::::::::::::::::. ..: . :.: :: :.
XP_011 CGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQAYQD
230 240 250 260 270 280
pF1KE0 F
XP_011 IKAKEEQELQDIQSRSKEQLNSYT
290 300
>>NP_001001994 (OMIM: 300051) neuronal membrane glycopro (246 aa)
initn: 1675 init1: 1675 opt: 1675 Z-score: 2145.9 bits: 404.8 E(85289): 8.6e-113
Smith-Waterman score: 1675; 100.0% identity (100.0% similar) in 245 aa overlap (57-301:2-246)
30 40 50 60 70 80
pF1KE0 RYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFECCIKCLGGVPYASLVATILCFSGVAL
::::::::::::::::::::::::::::::
NP_001 MGCFECCIKCLGGVPYASLVATILCFSGVAL
10 20 30
90 100 110 120 130 140
pF1KE0 FCGCGHVALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FCGCGHVALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGF
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 YTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEV
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 IKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACA
160 170 180 190 200 210
270 280 290 300
pF1KE0 GAGATVIALLIYMMATTYNYAVLKFKSREDCCTKF
:::::::::::::::::::::::::::::::::::
NP_001 GAGATVIALLIYMMATTYNYAVLKFKSREDCCTKF
220 230 240
>>NP_005269 (OMIM: 300051) neuronal membrane glycoprotei (265 aa)
initn: 1757 init1: 1675 opt: 1675 Z-score: 2145.5 bits: 404.8 E(85289): 9.2e-113
Smith-Waterman score: 1681; 86.7% identity (86.7% similar) in 301 aa overlap (1-301:5-265)
10 20 30 40 50
pF1KE0 METAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP
::::::::::::::::
NP_005 MKPAMETAAEENTEQSQERK----------------------------------------
10 20
60 70 80 90 100 110
pF1KE0 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
30 40 50 60 70 80
120 130 140 150 160 170
pF1KE0 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
90 100 110 120 130 140
180 190 200 210 220 230
pF1KE0 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE0 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
210 220 230 240 250 260
300
pF1KE0 CCTKF
:::::
NP_005 CCTKF
>>NP_001305658 (OMIM: 300051) neuronal membrane glycopro (269 aa)
initn: 1533 init1: 1533 opt: 1535 Z-score: 1966.3 bits: 371.7 E(85289): 8.8e-103
Smith-Waterman score: 1535; 94.5% identity (97.1% similar) in 238 aa overlap (57-294:2-239)
30 40 50 60 70 80
pF1KE0 RYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFECCIKCLGGVPYASLVATILCFSGVAL
::::::::::::::::::::::::::::::
NP_001 MGCFECCIKCLGGVPYASLVATILCFSGVAL
10 20 30
90 100 110 120 130 140
pF1KE0 FCGCGHVALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FCGCGHVALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGF
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 YTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEV
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 IKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACA
160 170 180 190 200 210
270 280 290 300
pF1KE0 GAGATVIALLIYMMATTYNYAVLKFKSREDCCTKF
:::::::::. ..: . :.: :: :.
NP_001 GAGATVIALIHFLMILSSNWAYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT
220 230 240 250 260
>>XP_005274546 (OMIM: 300051) PREDICTED: neuronal membra (288 aa)
initn: 1615 init1: 1533 opt: 1535 Z-score: 1965.9 bits: 371.7 E(85289): 9.3e-103
Smith-Waterman score: 1541; 82.0% identity (84.0% similar) in 294 aa overlap (1-294:5-258)
10 20 30 40 50
pF1KE0 METAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP
::::::::::::::::
XP_005 MKPAMETAAEENTEQSQERK----------------------------------------
10 20
60 70 80 90 100 110
pF1KE0 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
30 40 50 60 70 80
120 130 140 150 160 170
pF1KE0 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
90 100 110 120 130 140
180 190 200 210 220 230
pF1KE0 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE0 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
:::::::::::::::::::::::::::::::::::::::. ..: . :.: :: :.
XP_005 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQ
210 220 230 240 250 260
300
pF1KE0 CCTKF
XP_005 AYQDIKAKEEQELQDIQSRSKEQLNSYT
270 280
>>XP_016884923 (OMIM: 300051) PREDICTED: neuronal membra (179 aa)
initn: 1220 init1: 1220 opt: 1220 Z-score: 1565.9 bits: 297.0 E(85289): 1.8e-80
Smith-Waterman score: 1220; 100.0% identity (100.0% similar) in 179 aa overlap (123-301:1-179)
100 110 120 130 140 150
pF1KE0 VALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAV
::::::::::::::::::::::::::::::
XP_016 MQYVIYGIASFFFLYGIILLAEGFYTTSAV
10 20 30
160 170 180 190 200 210
pF1KE0 KELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQT
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE0 NGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATV
100 110 120 130 140 150
280 290 300
pF1KE0 IALLIYMMATTYNYAVLKFKSREDCCTKF
:::::::::::::::::::::::::::::
XP_016 IALLIYMMATTYNYAVLKFKSREDCCTKF
160 170
>>XP_016884922 (OMIM: 300051) PREDICTED: neuronal membra (202 aa)
initn: 1078 init1: 1078 opt: 1080 Z-score: 1386.0 bits: 263.9 E(85289): 1.8e-70
Smith-Waterman score: 1080; 92.4% identity (95.9% similar) in 172 aa overlap (123-294:1-172)
100 110 120 130 140 150
pF1KE0 VALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAV
::::::::::::::::::::::::::::::
XP_016 MQYVIYGIASFFFLYGIILLAEGFYTTSAV
10 20 30
160 170 180 190 200 210
pF1KE0 KELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQT
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE0 NGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATV
100 110 120 130 140 150
280 290 300
pF1KE0 IALLIYMMATTYNYAVLKFKSREDCCTKF
:::. ..: . :.: :: :.
XP_016 IALIHFLMILSSNWAYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT
160 170 180 190 200
301 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 06:17:55 2016 done: Thu Nov 3 06:17:56 2016
Total Scan time: 6.550 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]